RNA id: AMCG00014003


Basic Information

Item Value
RNA id AMCG00014003
length 996
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00014003
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49302622 ~ 49310125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTGGATTACTCTgggtctctgtctgtgtgCCTTAGAAGTGGGGGCCTACAGACCCATCTCAGGCCCGGAGAAGACAAACGTGCTGAGGGGGGGGTGGGTCTCTGTGCAGTGCCAGTACGACACCGTGTTTAAGGAAGACGTCAAGTTCTGGTGCAAAGGGCCCTCTATTGACAGCTGTCAGTCTATAGCGACTACAGCTGAAAGCCGTGACCCTGGAGACCACAGCACATCCCTCACTGATGACAGAGAGCAGGGCCTCCTGTCTCTCACTGTGCACAGGGTCAGAAGAGAGGATGAGGGATACTACTGGTGTGTGATTGagagacacacagcacacagactgCACATCAGAGTTACTGAGGTCCCCCCGGTGAAGACTGGAGAGATAGGGGGCTCCCTGACAGTGCAGTGTGACTACAGCCTCGCTCTCACAAGCACCATTAAATACTGGTGCAAGAGAAAAGACCAAAGCACCTGCAAGACTTTGGCAAGAACTGATGGAGGGAGTTTGGATCAGAACAGGGTGTCCATTTCGGATGATAGAGCAGGGCTGGTTTTCACTGTAATCATGCGCAGTCTGCCGTGGAACGATGCGGGTTGGTACTGGTGTGGCTTACAACAGACTGGACAGGATACGATGGAACCAGTGCTGATAGAAAACACTGAAGGTCAATGTACGAGAGCAAGAGGCAACCCGGAAAGCTCCTATGAGACAGACCCGAGGATGGAAGAGAATGTAGTCTACATCACGGTGACGGCGACTGACAGGGGGGCCCTGGTGGACACAGAGCTGTACAACACACCTGCCAACACACAGCAGAGGCACCAGGCCGAGCAATCTGTCATTTACACAACTCTGCAGAAAACCACAGCCGGGGAAGAGAGCTGCGACCTTCGGCAGCTGGAGGTGACCTACATGACAGTGATGGCAGTGAGCAGGACACAGCCCCAGAGAGACAGCAGCACCTACGCCAACATCAGTCATCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60289 lncRNA downstream 252190 49027284 ~ 49050432 (-) True G48275
TU60148 lncRNA downstream 651393 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 756347 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 796486 48505871 ~ 48506136 (-) True G48092
TU60041 lncRNA downstream 818312 48479448 ~ 48484310 (-) True G48086
TU60404 lncRNA upstream 43567 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 142908 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 227603 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 231234 49541359 ~ 49545278 (-) True G48398
TU60502 lncRNA upstream 303571 49613696 ~ 49613974 (-) True G48430
AMCG00014000 mRNA downstream 3905 49293127 ~ 49298717 (-) True AMCG00014000
AMCG00013994 mRNA downstream 376709 48918397 ~ 48925913 (-) True AMCG00013994
AMCG00013990 mRNA downstream 449652 48851288 ~ 48852970 (-) True AMCG00013990
AMCG00013991 mRNA downstream 482789 48818623 ~ 48819833 (-) False AMCG00013991
AMCG00013986 mRNA downstream 495035 48795219 ~ 48807587 (-) True AMCG00013986
AMCG00013998 mRNA upstream 2185 49312310 ~ 49317429 (-) True AMCG00013998
AMCG00013999 mRNA upstream 10046 49320171 ~ 49326142 (-) True AMCG00013999
AMCG00014002 mRNA upstream 17317 49327442 ~ 49330861 (-) True AMCG00014002
AMCG00013997 mRNA upstream 37159 49347284 ~ 49352698 (-) True AMCG00013997
AMCG00014001 mRNA upstream 44837 49354962 ~ 49385651 (-) True AMCG00014001
TU60179 other downstream 481466 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 481466 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 481466 48817983 ~ 48821156 (-) True AMCG00013991
TU59777 other downstream 1327707 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 1433759 47864850 ~ 47868863 (-) True AMCG00013946
TU60423 other upstream 174375 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 184602 49494727 ~ 49498630 (-) True G48392
TU60601 other upstream 409640 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 418379 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 434821 49744946 ~ 49747551 (-) True G48516

Expression Profile