RNA id: AMCG00014004


Basic Information

Item Value
RNA id AMCG00014004
length 3129
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00014004
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49441384 ~ 49448751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGCCGCCAGTGGTTACCATGctgagagggacagacagagactcCCTCGCCTCACAGCGCTCTCTAGAGCAGCCAGTCCTCTGTGTGGGGTCCAGCAGTGCACTGTCGGCTCCGGCTCCAGAAGCACAGATCCGGTACAGGTCCAGCCCGGCTCAGCCCAGCGCCTCGGCCACACAGCAGCTCCCCCCGGACCAGCGTCTTCACACggccactgaacacacacagaaatctCAACCACCGCAGCCGCCCCAGACCGGCGGGGAAGGAGAGGAGCTGGGGGTGGCAGCCTTGCCCCCGGCCAGGGCAGAGGCAGGAGAGGGCCCGGATGCCTTCTCTACGGAGGGTTTGGAGAAGTGGGATGGGGGTCCCGTCCAGCCAGACGCGGGGCGCCGGGCCGTGGGACGCAGGGTCCCCCGGGGGGCGAAGGATGGCGCGTCCAGGAAAGCGCCCCCCCAGCCCCCGCCCTTCAGCCATCGCTACCCACGACCCTTCGACCCCAACGACTACTTCACCACCCCCCGTGCCACGCAGCCCAATGGCACCCAGGCCGAGGGGACATCCCCGGACACGGTCAGCGCTGGGGCCCCTCTGGACGGCCCCCGCAACGGCAGCGAGAAGGGCACGACCCGCCTGCACAACCCGCTGTACCCTGTGACCGACGGCTCCTACAGCGCCTACGCCGTCATGTTCCTGTCGCTGGTGGTGTTCGCCGTGGGCATCGTGGGCAACCTGGCCGTCATGTGTGTTGTCTGGCACAACTACTACATGAAGAGCGCCTGGAACTGCATCCTGGCCAGCCTGGCCTTCTGGGACTTCCTGGTGCTGTTCTTCTGCCTGCCGGTTGTCATCTTCCATGAGATCACCAAGAGGAGGCTGCTGGGGGACCTGTCCTGCAAGGTGGTGCCCTACCTAGAGGTGACCTCCCTGGGCGTGACCACCTTCAGCCTGTGCGCTCTGGGCATCGACCGCTTCCACGCCGCCACCACCACCCAGCCCAAGTCGCGGCCCGTGGAGCAGTGCCAGTCCATTCTGGCCAAGCTGGCAGTGATCTGGGTGGGCTCCATGATCCTGGCGGTGCCCGAGCTGCTGCTGTGGCAGCTGGACCAGGACACCTCGCCATTGACCGGCGCCCTGGTGGACGCCTGCGCCATGAAGCCGGCGGCCAGCCTGCCCGAGTCCGTGTACTCCCTGGTGCTCACCTACCACGATGCCCGCATGTGGTGGTACTTCGGCTGCTATTTCTGCCTGCCCGTGCTGTTCACGCTCACCTGCCAGCTCATTACACGGCGCATCAGCAATGTGGGCAAGAAGCCAGAGGCCCGCGGCTCGCCCCGGAAGCACGAGCAGGCAGATGGGCAGCTGAACGGCACGGTGGTTGCGCTGGCGGTGGTGTACGGCGTGTGCGCTCTGCCCGAGAATGTTTGCAGCATCGCCCTGGCCTACCTCTCAGCAGAGGTGTCGGCGCCCACCGCCGCACTGCTCTTCCTCATCAACCAGTTCTTCCTGTTCTTCAAGTCATCGGTGACACcggtgctgctgctgtgcctGTGCAAGGCACTGGGCCAGGCCTTCAtggactgctgctgctgctgctgcgagGAGTGCGGCGTGGACGGGCCCCCCGGCAGTGCCACCGGCACCGGCAAGCTGAAGAGCAGCGAGGTGTCCTCCTCCATGTTCTTCGACAAGCCCAAGGACGGCACCTCCATCCTGGCCCTCGGCACGCCCTGCTagagcacccccccaccccctcggCACGCCCCATTAGACCCCCAGCCCCCCATTCGGGACACAACCCCCAGTAGGGAGTAAGCGCTGAACACCCGGACATGCTTCAGTGTCACCGCAGAGCCAGGGGAATGGGGGGGTGAGGGCCTATCGACCCACCTGCCGACTGACACCCCCCCAGGCCAGTGTCTGTCCAGCATGGACCCCCGACCTGCTCTGGACCCCCACCAGACTGTTTTTTATGGACAATCGTGACAGATATGTTGCTTTACTGTGCTTGTAATGTCTTTCTCTTGACTAAGAAGGACGTAGATTAGAGTTTAGCCAATGTAACCCATTTTGTcattagtgtttgtgtgttgatgTCCAGCATGTGGAGTTTGGGGGGGACACGATGTCACTGCAGAAGTGGGGGGGGGCGCAATTCTGTTTTGTGAACTGAGAACAATAACGTTGTTGTAAATATGTTTGACCACTTAACAGTAGAGCAGAGTCTCCGTCTCTCCGCTTCGCTCCCGAACATGGAGGAAAACAGTCCTGTCGTTTGTGTAGACCTGTTTTCCAGTAAAGCGGTTGTAAGCGCTCTTGCTGCTCCCACTGCTcccctgtctctgtgtcccaAGATCGGATCGGGGGGGTCAAGAAacgtcctcttcctcctctatAATTATCATCGCTATATTCCTGCCCCTGGCTGCAGTGCAGCATCTCGGCACTCGCACCCCCACAGAGCCGCGGCCACAGTGGGGGGGATCTGCGCTCACAAGGCCGCCAttgtatcccccccccccgctccccCCCCGTCCCGTCCGTCTCCCTGCATGTCAATTCCCCTGTGACGGGAGGGGGTTGCTAGGCTACCTGCTCTCTCTGAAATCCAAGTCTGCGCTTCGAGCCGAGTCCGGCCGGGGCCCCTTCTTTTCTTCggttttctctttcttgttgtttgtctctcctcctctttgGGGAGCTCGTCACCATGGCGATGGAGTGCTTGCTTTTGTTcctggggaagagagagagagttcaatTCAGCGTGAGTGACCCCCCCAACACAACACTGAGAACGAGGGGGAGGTTAGGCACAATACTTGGCTGTGGAGCTCGGAAAGTCATTATCAGGCATCACCTCCCCTCTCCCagttcctctctttctctccctctcccagttctctttctctttcccagtcccactctctctctctgcctgtctctctctctcattttgtgATGGTCAGGCAGTGCCTCCACTGTGATCTGAGTGCCGTGCCACTGCTCAGATGCTCTCGAAGGCCAGAGTGAGGCTGTGGTGCTTCTTATTCGTAATAGTTATCTTCTGCTGTAAAGAGAGTCGATTTCATGTTTTTGGTTTaataaagtgttttgtaaaaCCCAAaa

Function

GO: NA

KEGG:

id description
K04244 GPR37L1, ETBRLP2; prosaposin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60257 lncRNA upstream 329301 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA upstream 345838 49090314 ~ 49095546 (+) True G48235
TU60250 lncRNA upstream 391086 49027168 ~ 49050298 (+) True G48236
TU60146 lncRNA upstream 587021 48853986 ~ 48854363 (+) True G48173
TU60144 lncRNA upstream 590373 48846064 ~ 48851011 (+) True G48171
TU60383 lncRNA downstream 4282 49453033 ~ 49453872 (+) True G48353
TU60389 lncRNA downstream 5233 49453984 ~ 49456698 (+) True G48354
TU60422 lncRNA downstream 35738 49484489 ~ 49484959 (+) True G48372
TU60526 lncRNA downstream 230746 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 280920 49729671 ~ 49731800 (+) True G48460
AMCG00014005 mRNA upstream 21487 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00013996 mRNA upstream 92783 49345097 ~ 49348601 (+) True AMCG00013996
AMCG00013993 mRNA upstream 484519 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013992 mRNA upstream 528316 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013995 mRNA upstream 537354 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00014010 mRNA downstream 91679 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014009 mRNA downstream 103408 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014022 mRNA downstream 116213 49564964 ~ 49569099 (+) True AMCG00014022
AMCG00014015 mRNA downstream 121450 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014013 mRNA downstream 139426 49588177 ~ 49594866 (+) True AMCG00014013
TU60357 other upstream 94163 49345228 ~ 49347221 (+) False AMCG00013996
TU60243 other upstream 340926 49076742 ~ 49100458 (+) True G48231
TU60248 other upstream 374368 49014629 ~ 49067016 (+) False G48235
TU60138 other upstream 615329 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 662925 48776497 ~ 48778459 (+) True G48150
TU60435 other downstream 89303 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 89303 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other downstream 89303 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other downstream 89303 49538054 ~ 49545335 (+) False AMCG00014010
TU60500 other downstream 164950 49613701 ~ 49617240 (+) True AMCG00014021

Expression Profile