RNA id: TU60438


Basic Information

Item Value
RNA id TU60438
length 3632
RNA type TUCP
GC content 0.53
exon number 5
gene id AMCG00014010
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49538054 ~ 49545335 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATTTCGTGCTTCCCGTGAGTAGAGCAGCGCAGACGAGCGGGAGGCAGAGCAGCGCGCAGCGGAGCACACGTCTTCAACGACATCGACCCCGCCATGCACAGAGACTGTCCGCTCGACTGCAAGGTCTACGTCGGGAACCTGGGCAACAATGGCAACAAGACTGAGCTGGAGCGCGCCTTCGGCTACTACGGGCCCCTGCGCAGCGTGTGGGTCGCCCGCAACCCACCCGGCTTCGCCTTTGTGGAGTTCGAGGACCCCCGCGATGCCGCTGACGCCGTCAGGGAGCTGGACGGGAGGAATCTGTGCGCATGCCGCGTGCGTGTAGAGCTGTCCAACGGGGAGAAGCGCACCCGCAACCGAGGGCCCCCGCCATCCTGGAGCCGCCGCCCCCGGGACGACTACAGACGCCGCAGCCCGCCGCCCCGGCGCAGGTACGAACCCTTTAGACAGCGGGGCTTcggcctctagtgggggaaACTAACTTCAGCTAGGAGAGTGTCAACTCCACCCAGTTTTACTGAAAAGTTTTGAGTCTGATTTACAgatttattcccccccccccctccatttcAGATTCCTAGTTCCTCCAGCTTCCTGTTTTGTCTTCATACGAAAGCTAAGCCCATGAATACATTGACTCGGGTAGCCTGTAGTGTTTTGGGTTGAGGGAGTTGTCGGCCCCTCTCTCTGAGGCGCTGACCGCTGGGGCATGCGATGACCAACTGTCTTAATCTAGTCTCATCTTCATTGTCATCTGTTAGTCTAACATTGCAGCCAGGTTTGTTAGAGGGGTGAGGTGGGGTTCAGGGCTTGGGttcgggtgggggggggcggatACTGTACTCTGTTTAAAGTGGGTGCAGTCTAGGGCAGTAAATAGGGCTGGGCTCTGTGATGCTCTGAACTGATGTGCTGGATGTAACGGTCGCTGCAAATTTGAAGCTGATTAATGTACCCAAACCCCAAACCTGGTCCAGCTGTCCGACGACTTGACGCTGGTCTGGTGATCAGCTGGGTCATCGGCCCAGTTGTGCTTAGTGTCCCGGTGAGAGCCCAGTCCTATTTCTAGTTGAGTTGCAgaagatttaaaatacattttagttaaaaAGTGATGCTAGATTTGGTTGTAatagccttttatttttttgaaggttgcttacttttgtttttaccatctctatattaataaaaatgaacccCCGTTGCAGAGTCACCATCATGCCTCTTCTCACCACCCTCTGAGTCAGTCAACTAGCCCTCTTTCAGCGTCATGTGACCACTGACCAGCGTGCCCCACTCAGCTTGGCTGGGGTCGTATCACATGACCCAGGCATGGCCGGTCGTCAGGTTGCACCGCCCTTTGGTTCCTGAGCATGCTGTGTTCTCTCAGCCTCCTCTCCAACCTAAACCCAATCAGCAGCGGCCTACCTCACATCCCTGACCAATCAGCTGTTTACTTTTCCAAATGTCTACACAACAACCTACAGCAACAGGCCCTCGGCTAAGccataaaagcaggaaaaatccACAAGCAGCCCCCATCCGCCAACCAGCTAAACAGCTCGCAACTTCTGGCAAATCCTATTCAGCAAATTCTGCCTTCTCCTGCCCACCAGTCTGGCATCCCTCGCCATTTCTAGCTTGTTGAAAACCAAAAGACTAGTAAGTTTTTCCTGCTTAATACAGTTTACTGCTGGTTACAGTTTAAACGAGTAAGCTGCTTCATTTTAGACCTTTTCTTTTATcgttttttattgaatttttattttaaaaaattcaaTGGTTggcttttttaatttgactaaGATTGTCCGTTGTCTTGCAGGGTTAGCCTAGTCTCATGTAGACCAAGTAGTTTAATGAGTTTATCTTGGGGATGggtgggttggggtggggggggggggggggggggggggggggggggggggggtttgaaGTGCCCTGGTGTGTTCTGGAGAGGTCACCTTTTTAACCGAAGGACAAATTTAAACCCCACGGGGAAGAAAAAATGAGCTTCCCTAGAGTATTTGCCTCTTAACTTCTCGCAGTGTGGCTTTGAATTGCTTCAGTCTGAGGCTGCAGTTAAACCTGCAGTGTCTTGGTCTCCTGGAAGCGGTGCTGTCTGTTGACTTCCTGGTTGAGTAGCTGGAGTTTGTAGTTCACTCCTGGATGTGGTGTGACAGACCTGAGTAGAGCATGGTCTTTATAAGCGACCCCCCCCAGTGGCAGAGGCGAGGGCGGGGTTTTTAGACGCTCTTTGGGTCAGTGCTCTAGTGGGCGCTCAGTTCATGGGACAGATTCCCTGACCCTGCAATAGTCCCCCCGTTCCCATCTAGTGCCCTGGTTAAGAGACGGTAATTGCCCTCGTCCCTCTGATTGATCCTACCCTCCCTATGTAGGGGTTGTGGTGCCCGAGCAGCACAGTGGAGGCCTTGGTGGCACTGCCCCCGCGCTCACGCCTTGTCGGTGTTTAGGGGGCCGTAGCAGGGAGGCCCCATCGTTGCTGTGCTAGGGGCAGGTGTTGAGGGGCCCGGGCGAGTGTGCAGTGTGGGGTTGGTGCAGTGGCCAGGCTGCGCATGGGCCTCAATGTGACGCTGCGTTTCTCGTTTCCAGATCGCCACGCAGGAGGAGCTTCAGTCGCAGCCGCAGCAGATCTCTGTCCAGAGACCGAAGAAGGGAGAGGTCCCTCTCCCGTGACAGGACCCGTAAGCCTTCGCGTTCCTTCTCCAGATCTCGCAGccGTTCCAGGTCAAATGAACGGAAGTGAAGTGATGCTACAGTGGAGGAGAGATGTGGAGAAAGTTCAACCCCTGAAAGCCCACCCTTCCCCTGGTAGCATCCCCTTAAGGACTATGAGCTCTGTAGAGATGTGCtattcttttccatttttttttttttttttttatatataaattctaCGTTTTAGCGGTTATGCCTTTATTTCCctccccccccttttttttttttttttttaaatctgtgtgaAATGCAAGATTAACAGTTGGTGTATAGTAGATCTGTATATACGAGTGGCTGTGTGCAGGAGAGGGCCGTCCTGCCCGGGTCCCTCCGGCAGTGCCACGCTCACCGTCGCACAATTAAACTTGATCCTTTTCCAAAGCGTTTGTGCGTTGTTCTGAACCCGAGTGCTGCCCTGCGCTCGGCCggtggggggggcgggtggCTGGGGCTCTTCAGTTGGGTTTGAGCTGGGTGGGTCTGTGGCTTCAGTCCATTTAAGCATCCAAATTCTGCCCTTGCAGGGGTGGGAGTAGTGGCTCAATGGGCCGGGGGCTGTGCAGGCAGTTTTGGCAAGTTCTGGTTCTGTCCCGGCCGGTCTGTTCCAAGGGAGGCCTCTCTGGCATCTTGTGCCGCAAATCAAGTTTATTTTCGCCCccctgtatgtttgtgtataaagGCCTTTCGAGAGCTTGGGAAGGGTGTCTGAAGAGTCCTGTGAGTAATGAAGAAATCTTTGTAACAATCTAgtccttttattttaaacttttgttttggcTGTTTGTAAGATTTGTAATGTTCTCTGAATTAAACTTTGGTTATGGAACGGTCGAGTCTGGTCTCGGGTCCCTGGCTGCTCCAGTTAGCAGGTTTTTAATCCTGGGGTGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 53095 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 81356 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 84182 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 425971 49068105 ~ 49112083 (+) True G48243
TU60526 lncRNA downstream 134162 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 184336 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 201180 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 208249 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 247871 49793206 ~ 49793650 (+) True G48479
AMCG00014004 mRNA upstream 89303 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014005 mRNA upstream 118157 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00013996 mRNA upstream 189453 49345097 ~ 49348601 (+) True AMCG00013996
AMCG00013993 mRNA upstream 581189 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013992 mRNA upstream 624986 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00014009 mRNA downstream 6824 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014022 mRNA downstream 19629 49564964 ~ 49569099 (+) True AMCG00014022
AMCG00014015 mRNA downstream 24866 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014013 mRNA downstream 42842 49588177 ~ 49594866 (+) True AMCG00014013
AMCG00014016 mRNA downstream 65022 49610357 ~ 49613183 (+) True AMCG00014016
TU60357 other upstream 190833 49345228 ~ 49347221 (+) False AMCG00013996
TU60243 other upstream 437596 49076742 ~ 49100458 (+) True G48231
TU60248 other upstream 471038 49014629 ~ 49067016 (+) False G48235
TU60138 other upstream 711999 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 759595 48776497 ~ 48778459 (+) True G48150
TU60500 other downstream 68366 49613701 ~ 49617240 (+) True AMCG00014021
TU60533 other downstream 144337 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 153285 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 155916 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 157743 49703078 ~ 49703528 (+) True G48455

Expression Profile