RNA id: AMCG00014013


Basic Information

Item Value
RNA id AMCG00014013
length 2409
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00014013
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49588177 ~ 49594866 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGGGGCCCAAAAGGGAGTGTTGTGCGACCACATCCACATCATTAGCCCAGCCCCTCTGCAGCCTGGGAGCCGCCCCATGACACAACTATCAGGCAGCACTGAGCCACATCCTGTCGCTCAGCCGCCCTGCTCTGACACACTGTGGAcccacagcacacaacacacaacacagcgcacaacacacaacacagcgcTCACAGCACCGACTGCCGAGGCTCAGACACCAGAGAGACGTCGCGCTGTCCAGGGAGAGAACCACACTGTCACAATGTCCCAGACCTGCCTGAACTGCCTGAAGTACACGCTGTGTGTCTTCAACTTCATCTGCTGGCTGTGTGGCGTCTGTGTGATGGGGTTCGCCATCTACCTCATGACAACCTCCACGTATGCGTCTCTGGTACCCTCGTTGTCCTCCCTTAACGTGGCCAACGTGCTGATCATCGCTGGCACCATCGTCACCTGCGTGTCCTTCCTGGGCTTCCTGGGCGCCCTCCGGGAGAACCGCTGCCTGCTGATCTCGATCGACCTGTTCCTTGAGAAGGAACTGAAGCAGAGCCTTAACCAGGCAAAGCACAACGCCACCAGCGACTGGGACAACGTCCAGCGCCTGCTCCATTGCTGTGGCATCCATAATAGTTCTGACTGGAGAAATAATTCCCGACTCCACTTCCCCAATTCCTGCTGCAAAAATGACTGCACTAGCAACCCTCCGGACATCTGGCCAGAGGACCACCAGTGTGGGGCAGCGAGAGGGAGCAGCATGTCCGAGTGGGATGTGCTGACCCCTGTGCTGGCATGGCAGTGTGGTGCTGATGGTACCTTATGGCAGCATGAGCAGAATGCGGAGCACCAGGGGGCTCCCGAGGGCTGCTACACCAAGCTGAAGGACTGGTTTGAGAAGAACTTCCTGAACGTGGGTGTGGGCGTGATCATCCTGTGCATCATTGAGGTCCTGGGAATGTGCTTCAGCATGACCCTGTTCTGCCACATCAGCCGCTCCGGCCTGGGCTTCAAATGAGAAGGAAGGAGGCTCTGACACAGCTGACGCTCAGGATACCCCAGACCCTCTGAGATGCACTGAGAACTCAGCCCggccccagtgtgtgtgtggagctcAGCCCaagagtgtgcatgtgtgtacgtgagtgtgagtgtgtgcgtgtgcatgtgtgtgtgcatgagtgtgagtTTGTGCATGCGTGTGTCTCTGGATGCACTGCTCTCTTCCCACAGGGTGAAAGGGGAAGTGGTTGTGTGTGCAGAGACCCTGAAAACGACTTATAAAAAAATCCAGAAGCAGCATTATTAATGCAAGAttattgtgtctgtttgtttttcacatgatCTCGTGTGTCAGATGTGACTGTATGTgtacagatattttattttctctctggttATTTATCTGCTGGAAATGTTCTGAGATGCCGGTGCGCCCATGCTCTCTGCCAGTGCCTGTGAGATCACTGGTTTGTCATGAAGGGCAACGCGGTGTCATGTGACTGGGGGAATCGCTGTGTTTGACACTTGAGCACAATGCAGCCAGTCCAAACAGACTCCTGGCAGACTGGCGCTGAACCCGGGCAACCTCCACAGGGCATGTGGCACAGATATGCAGTCAGTCAGGGAACTCACTCGGTCAGTGCCCCCTGATAGTGCGAACGCATTCGAAACGTGTGCTGAGCTGTTACTCTTTTGTACAAGGGGGGCGTCCCCTCCGACAGCCTGTACTTGTCCTTAGcattatatatagagatataagatatatatatgCGTGTCTTGGAGGTGAAGATGTTGAAGTGGCGATGAGGCCGGACATATTGGGGAAGGACGAGTCGGACACAGGCTACAGACGCTGTGCAAGGGATCCTAATGGACAAGTGACCAGGAGGAAGAgcatgggagagagggagcaacaCTGACTGATGACGATGATCTATCTatcgatctatctatctatattcaTTGATGTGAATTGGCATGTAACACATGCAACATGTAACATGTATATACAGGCAAACCAAACTGACTTGTGTTAGCACTAATACTGATTATACAACAGCAACTCctattattaaatcaaaagcTATTCATTCATTAAGCACATGAATGCAGAACAGGAGGCGGAGAGAAGGAGCGAGTGAGACGGGGCGCCTCCCAGCACACAGAACCAGAACTCTCTGGGCTCCATGTAGAACCAAGACCAGACCCCAGGGGACAGGGAAGGGCAGGTCAGCACAGACCTGATCCTGGGAGGGTCACAGCCTCAGAGCAGACTATGCGGTGTTGGGGGGGTTTAAGACTGGTGGAAGTAAATCTATTTATTGTAGTTCTGCAGCAAATGAGCGAAACTTGTGAATCTGTACAGCTGTCACGCTAGCGTCCATTCTGCTTTAAAACTGTT

Function

GO: NA

KEGG:

id description
K06489 CD53, MOX44, TSPAN25; CD53 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 103218 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 131479 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 134305 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 476094 49068105 ~ 49112083 (+) True G48243
TU60526 lncRNA downstream 84631 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 134805 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 151649 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 158718 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 198340 49793206 ~ 49793650 (+) True G48479
AMCG00014015 mRNA upstream 1355 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014022 mRNA upstream 19078 49564964 ~ 49569099 (+) True AMCG00014022
AMCG00014009 mRNA upstream 31336 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014010 mRNA upstream 43467 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014004 mRNA upstream 139426 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014016 mRNA downstream 15491 49610357 ~ 49613183 (+) True AMCG00014016
AMCG00014021 mRNA downstream 22130 49616996 ~ 49620027 (+) False AMCG00014021
AMCG00014017 mRNA downstream 25767 49620633 ~ 49627765 (+) True AMCG00014017
AMCG00014025 mRNA downstream 34943 49629809 ~ 49633867 (+) True AMCG00014025
AMCG00014020 mRNA downstream 52932 49647798 ~ 49653162 (+) True AMCG00014020
TU60435 other upstream 42842 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other upstream 42842 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other upstream 42842 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other upstream 42842 49538054 ~ 49545335 (+) False AMCG00014010
TU60357 other upstream 240956 49345228 ~ 49347221 (+) False AMCG00013996
TU60500 other downstream 18835 49613701 ~ 49617240 (+) True AMCG00014021
TU60533 other downstream 94806 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 103754 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 106385 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 108212 49703078 ~ 49703528 (+) True G48455

Expression Profile