RNA id: AMCG00014014


Basic Information

Item Value
RNA id AMCG00014014
length 1404
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00014014
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49680521 ~ 49682420 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGAATCTGGAGACTCTGGCTCCTGATTGGCTGCGCGGAGTTCCGTGCCGCCCGGACTGATTAAGCAGGAACACCCGGCACGCTGGAGCGGAAACGAGCTCACGGCTGCGGCAGACAACAGCGCCGGCGCGAAGCAGACACATGTCTGCGGGTTTTACAGTCATTGTCACATTGCCGTGTTTAATACGGCGCTCAGAGCTCTGCCTGGCCGGCCCGGTACCTGTGCGCTGTGCTCGACTTGCGTCAGACGGGAAGAGGGTCATTGCCGTACCGCAGCGCAGGAAGTGCCGGGGTCCGCGCCTCTGCGCTGTTCATGCTGCTCCAGTGATCTCCGAGCAACATGGCCGGGATCCCGCCGGACTCATGGCAGCCCGCCACCGTCTCTCTGGACACGACGATGGGCACCATCGTGCTGGAGCTGTACTGGAAACACGCCCCCAAAACCTGCAAGAACTTCGCTGAGCTGTCCAGGAGGGGCTACTACAATGGCACCAAGTTCCACCGCATCATCAAGGACTTCATGGTCCAGGGGGGCGACCCGACTGGCACCGGACGGGGGGGAGCCTCTATATATGGCAGACAGTTTGAAGACGAGCTGCATCCAGAACTCAAGTTCACAGGTACCGGTACTGTTTCATTGTATTGCTACTGCAGTGGTGTTCCAGTCTGCGTGAGCCGTGTTCAGTGCTGCCGTGTCTGCAGTGCCTTTGTCACGCAGCGAGTTGTGCGTAGAGTGGATACTTCTCACAATACAGAGAGGATGGTTCCTGATACCAGAACACTGTTTTACCCGAGGTCTGTGGTATGATGACTCGCTCCCTATGCTATCATTAAGACACAGGCtgcatttaatcattatttatatttcatttcttTTGCTTGTCCTTTGTATTCTGTTCATTaatgcaatgtttatttttaatagatacCTGTactgaagatttgtttttattattttacatttgcactgGTGGCTGCTGTGCTCGTGACCGCAGCACAGTGTTGTCGGTACCTCTCGGGGACGCGGCAGGGGGTCAGCTGGTACGAACCTGTGTATCTGTGTCCTCAGGCGCTGGTATCCTGGCGATGGCCAACGCCGGCCCCGACACCAATGGCAGCCAGTTCTTCCTGACGCTGGGGCCCACGCAGTGGCTAGATGGCAAGCACACCATCTTCGGGCGCGTGAGCCAGGGCCTGTCCGTGGTCAACCGCATAGGCATGGTGGAGACCAACACCCAGGACCGGCCCGCCGACGACGTCAAGATCCTCCGGACCTCCCTGCCCTGCTGACCCGGACCCTCAACCTCTTGTCTTCATTTTATATCGTTTGTACAGTGAACACCCCGGCTGAACTCAGACCCACGACCTCTACCTGAATAAAGTCTTTTTACAGAATTTTTAA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12733 PPIL1; peptidyl-prolyl cis-trans isomerase-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60526 lncRNA upstream 645 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 195562 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 223823 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 226649 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 568438 49068105 ~ 49112083 (+) True G48243
TU60545 lncRNA downstream 47251 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 64095 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 71164 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 110786 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 125728 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014018 mRNA upstream 6770 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014020 mRNA upstream 27359 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014025 mRNA upstream 46654 49629809 ~ 49633867 (+) True AMCG00014025
AMCG00014017 mRNA upstream 52756 49620633 ~ 49627765 (+) True AMCG00014017
AMCG00014021 mRNA upstream 60494 49616996 ~ 49620027 (+) False AMCG00014021
AMCG00014019 mRNA downstream 4388 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014027 mRNA downstream 12846 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014026 mRNA downstream 21291 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014032 mRNA downstream 24441 49706861 ~ 49716881 (+) False AMCG00014032
AMCG00014029 mRNA downstream 35094 49717514 ~ 49728992 (+) True AMCG00014029
TU60500 other upstream 63281 49613701 ~ 49617240 (+) True AMCG00014021
TU60435 other upstream 135186 49538054 ~ 49545335 (+) False AMCG00014010
TU60533 other downstream 7252 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 16200 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 18831 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 20658 49703078 ~ 49703528 (+) True G48455
TU60542 other downstream 24423 49706843 ~ 49717428 (+) True AMCG00014032

Expression Profile