RNA id: AMCG00014015


Basic Information

Item Value
RNA id AMCG00014015
length 2444
RNA type mRNA
GC content 0.62
exon number 14
gene id AMCG00014015
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49570201 ~ 49586822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGATGAGGGAGAAGTAGAGCCAGTGTGGGAGATAGAGGGGAGTAGAGAGGCGGCTGAGTACACCCGCCACGTTCACTTCCTGGACCAATCAGACAGCTCTGCCCCCCAGGAGGCCGAGGACACCACTCCTCTAGCCCAGCCCCACCAATCAGAGGAGGAGAGCGGAGCCGCCCACTTTGcccagaggaagaggaagctgGGCTCGACACGCCGGGGCCTGAGGGGCcgacacagagaggcagagagagaggaggaccTGGAGCAgctgggggaggagagaggagagggaggaggggaaagCGGGAATGAGAgaaaggagggagggatgaGGGCAGAGGGTGAAGAAGAGCTAGGCAGAGGAAAGAGAGCGCAGGTCCTTGGGAAGCCAGTACTGGAGAGGGGAGAAGAACGAGGgctggagggagagaaggaggaggaagaggagaagaggCAGAAGGCAGAGATTTCCTCCCTCAGCTCCCTTCCCTCGGCTCAGGGTGACGTTCTCGGTGAAGTGCCACATTCAGCCCAGGAGGAGGCACATCAGCAGGAGCCCCCGGCCCCCACAGGCAGGCGGAAGAAGATGGGATCAAGCCGCCGGGGCCGTCTGGGAGGCggcagggggggcagggggctggGGCAGATCGGAGAGGTGAGGGGCGAGGGGCAGGCCGACATCTCAGACATcctgcagaggatccaggaggtCTTCCGCAGCTGGGACCACGAGGAGAAGGGCTTCATCACCCGGGAGGACATGCAGgggctGGGTGGAGAGCTCGGCCTCAGTGCCGGGGAGCTGCAAATGGTGTTCGACGGGCTGGACAGAGACGGAGACGGACTGGTCACTCGGCAGGACTTCACCGTGGGCATGCGCAAGTTCCTGGGATCCCAGCAGACAAAGCCCAGTGTGTACCAATCACAGGGCTGCGTGGTGCCAGAGGACGTGGACGATGAAGAGAGGCAGCACTTCCTGATCATGATGGACAGCCTGGGGGCCCACAGCCTGCTGCAGGACCAATCTGAGATCTGGAAGCTGTGGGCGGAGCTTCGGCAAAACGAGCCCCATCTCCTTGGCAACCTGGAAGAGTTTGTCTCCAAGGTGACGGACCAGATCCGAGCGGCGCAGCGGGAGAAGGAGACCCTGGAGCGGACGCTGCAAAAGAAGAGCCACTCCCAGAGGGCCGAGCTGGAGAGAGCGCTGGACAAGAAGAACGCCGAGGTGCAGGGTCTCGTCATGGTGCAGAACGAGctgGAGGACAGTGTGCTACAGCTGCGCAGTCAGCAGCGGCAGACGAGCTGTGAGAACGAGGAGCTGCGCAGGACGAACCGCGAGCTTGAGGCGCAGCTGGAGAGGATCAGAGCACAGCTGCAGGAGGCACAGAGCCGCATGCAGGACCTGCGCAGCACCATGATGGCCCGCAGACACGGACTGCCACAAGACGCAGGACCGGCCCCCAGGGACCCCGCAGACCCCTCCAGTGCAGAGAGCCAGGCGGGCCAGCGACTCGAGGCGGAGGTGCTgtgggaggaagaggagaagctGGCGAGGGAGCAGAACCCGTGGACACCCCCGCTCCGCAGCCGGGAGCGCCTGTACAACGTGGTGCTGGTGGGGAGCAGCAGCGTTGGCAAGACATCCTTCCTGCGGAGGTTCCAGAGTGGGGTGTTCAGCGCTGACCATGGGGCCACCATCGggctGGACAGCTGTATCCAGACTCTCACTCTGGGTGGGGGTCAGGTGCTCCTTCAGCTGTGGGACACCGCTGGACAAGAAAGGTTCCACAGCATCACTAAACAGGTCCTGCGCAAGGCTGACGGACTGGTGGTCATGTACGATGTTGGCTCCGCCCACTCCTTTGCTGAGGTCCGCTATTGGGTCACCTGTATCCAGGAAGGAACCTCCGATGATGTCGTAATTCTGTTGCTGGGCAACAAGAGTGACAGCACCACTAAACGGGAAGTCCCGCCCGAGGAAGGGGAGCGGCTTGCCAGGGAGTACAGGGTGCAGTTCCTGGAGTGCAGCGCGGCGTCGGGACACAACGTGACTGAAGCCATGACCGTCCTGGCCAGGATGTTGTGCGACCGGGAGGAGGCAGGACACGATGACATGGTGACGCTGAAGGAGCCACCAAGGAAGAAGAAGGGCTGCTGTTAGCGCTCCACACGGTCCTGCAGCGGACAGACGGACGAGCTCCTGAACGCCTCAGGAGTGACACAGAGTGACCGGCCACCGCTCCTCTATGACACTCGTGATGCCCCCCCGCAGAGACGCACTGCGGCTGTGTGTCTCACTGCTGAGCGTTGGCAGGTCCTCACACACAGAGCTGTGCAGAAAACCCCATTACTTTATTAcagatacagtatatatgtgtgcTCATCTTTTCTCTGCTTGCCCTCGAGCTCTTGtttataaagcaaataaagataataatgtTC

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 85242 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 113503 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 116329 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 458118 49068105 ~ 49112083 (+) True G48243
TU60526 lncRNA downstream 92675 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 142849 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 159693 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 166762 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 206384 49793206 ~ 49793650 (+) True G48479
AMCG00014022 mRNA upstream 1102 49564964 ~ 49569099 (+) True AMCG00014022
AMCG00014009 mRNA upstream 13360 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014010 mRNA upstream 25491 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014004 mRNA upstream 121450 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014005 mRNA upstream 150304 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00014013 mRNA downstream 1355 49588177 ~ 49594866 (+) True AMCG00014013
AMCG00014016 mRNA downstream 23535 49610357 ~ 49613183 (+) True AMCG00014016
AMCG00014021 mRNA downstream 30174 49616996 ~ 49620027 (+) False AMCG00014021
AMCG00014017 mRNA downstream 33811 49620633 ~ 49627765 (+) True AMCG00014017
AMCG00014025 mRNA downstream 42987 49629809 ~ 49633867 (+) True AMCG00014025
TU60435 other upstream 24866 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other upstream 24866 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other upstream 24866 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other upstream 24866 49538054 ~ 49545335 (+) False AMCG00014010
TU60357 other upstream 222980 49345228 ~ 49347221 (+) False AMCG00013996
TU60500 other downstream 26879 49613701 ~ 49617240 (+) True AMCG00014021
TU60533 other downstream 102850 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 111798 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 114429 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 116256 49703078 ~ 49703528 (+) True G48455

Expression Profile