RNA id: AMCG00014016


Basic Information

Item Value
RNA id AMCG00014016
length 1093
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00014016
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49610357 ~ 49613183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTTCATTATTAACAGATGTGTCAGATGGCAGCTGTTGTCATTATTGCAGAGTCGAATGAAAGTCATGCTGCTGCTGTCAGTAGGGAAGTGAGGAAATGTTCTGATTAGTAAGCTATCTATTGTGAGTCAACAGACTCcgtgctgtctgtctgtctgtctgtcccacAGCAGGAAGACACTGAGCACTGCAGCGTGTGACTGGAGTCAATCTccgtgtctgtctctctggaGTCGAGCTGGGCTGGACGGTCAGTCAATCTCTGTGTCCGTCTCTAAGGAGCTGAGCTGGGCTGGACGGTCAGTCACTCTCCGTATCCGTTTCTCTGGAGCTGAGCTGGGCTGAGATGGGCGACCAGTCCGAGTCTCCGTGTCCATCTCTCTTCACCATGAGGGCACTACCAGCTCTGCTACTGCTGCTCAATCTACTCACAGgCGTCTCATCCCTCAGCGGTCCGGCTAAGGTGACAATGTACACCCAATCAGACTACAAGATAAACTACACCTACAACAGGAATTACTACTTCACTCACAAAAAGTACTGGTGCCAGGGCTACTACAAGCTGCACTGCAACATCCGGGCCTACGCAGGGGATGCGGTTGAGGGCAGGAACGTCATAGTAGAGGACAACAAGCAGACAGGCAGCATCACCGTCACCATTAAGAAGCCCCAGCTCTCCGACGCCGGCGACTACTGGTGTGGCATCGAGAAGACCGCCCTGCTGGACGTCATGACGTACACCCGAGTGGAGGTCATGCAAGGTTCTGCACCCCAGGACAgGGTGAAGCCCCCTGTGCACTACATCGTGCCGTTCAGCTTGCTGGGGCTGCTGGTCGTCCTAGTGCCGTTGGCGGGCGTGGAGCCGGACGGCGGTGTGACGTATGCCGAGGTGAAGGGGGTGCAGTTGACCTCTCTGTCCCCAGGACGACCCCCATCCGCCAGGGAACCGGACGGGCCGGACAACACACAACTGCACTACAGCGACATCCAGCTGCTGTAGTGACGAGAGACCCCCTACCCCCGTGTTACAGTCTTTAAAGGAGATGTAAATGCTATTACTACCACAGCTACTAATAAACACCTGTTTCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 125398 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 153659 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 156485 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 498274 49068105 ~ 49112083 (+) True G48243
TU60526 lncRNA downstream 66314 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 116488 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 133332 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 140401 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 180023 49793206 ~ 49793650 (+) True G48479
AMCG00014013 mRNA upstream 15491 49588177 ~ 49594866 (+) True AMCG00014013
AMCG00014015 mRNA upstream 23535 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014022 mRNA upstream 41258 49564964 ~ 49569099 (+) True AMCG00014022
AMCG00014009 mRNA upstream 53516 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014010 mRNA upstream 65647 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014021 mRNA downstream 3813 49616996 ~ 49620027 (+) False AMCG00014021
AMCG00014017 mRNA downstream 7450 49620633 ~ 49627765 (+) True AMCG00014017
AMCG00014025 mRNA downstream 16626 49629809 ~ 49633867 (+) True AMCG00014025
AMCG00014020 mRNA downstream 34615 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014018 mRNA downstream 40465 49653648 ~ 49673751 (+) True AMCG00014018
TU60435 other upstream 65022 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other upstream 65022 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other upstream 65022 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other upstream 65022 49538054 ~ 49545335 (+) False AMCG00014010
TU60357 other upstream 263136 49345228 ~ 49347221 (+) False AMCG00013996
TU60500 other downstream 518 49613701 ~ 49617240 (+) True AMCG00014021
TU60533 other downstream 76489 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 85437 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 88068 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 89895 49703078 ~ 49703528 (+) True G48455

Expression Profile