RNA id: TU60500



Basic Information


Item Value
RNA id TU60500
length 758
RNA type TUCP
GC content 0.60
exon number 5
gene id AMCG00014021
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49613701 ~ 49620027 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gagagagagagagagagagagagagagagagagagaaagagagccgCGCAGTTTGCTATTCTGAGCTGCGGGCgcttcctgcagcagctccgACCCGCAGCGCAACACACAGCCCTCAGCAGTCCAGTCCGGCCGGGACACAGTCCAGCGCTCAGCAGTCCAGTCCGGCCGGGACACAGTCCAGCCCGAGGGATGAGCCGGATCCAGCGGAGCCTGTCGCTGCTGCTCGCCGTGGCAGGCGTGTGTGTGGCGCTGCACCCCCAGGAGATGGAGTGCAGCTACGAGNNNNNNNNNNNNNNNCTGCCCAAGGTGTGGTGCAAGCAGAACTCCAGCCTGTGCTGCTCCGGCTTCGCCACGGCCAACCTGGAGGAGAGCCTCCACGAGGGCCAGGTGGTGATCCGTGTGCAGCCCGAGCGGCTCAGCTTCACCGTGAGTGTGACCCACCTGCCCGAGGGCCCGGGCGTGTACTGGTGCGGCGTCCTGCAGCCCAACAACACCATCATCAAGCTGCGGGAGCAGACCTTCTCCACCTCACTGTCGCCCCTGGAGATGGCCTGGAGAATCGGGCGCTGGCTGatcttcctgctgctgctgctcagcgTGATCGTCAGCTGCCTGTACTCTCACTGTGAGCAACCCGCACCGCACAATTACACACCctatacacaatacacacaccacacacacactgcacactatacacacactacacacacactatacacacactgcacacttacacacacactatacacNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 128742 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 157003 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 159829 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 501618 49068105 ~ 49112083 (+) True G48243
TU60526 lncRNA downstream 62257 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 112431 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 129275 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 136344 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 175966 49793206 ~ 49793650 (+) True G48479
AMCG00014016 mRNA upstream 518 49610357 ~ 49613183 (+) True AMCG00014016
AMCG00014013 mRNA upstream 18835 49588177 ~ 49594866 (+) True AMCG00014013
AMCG00014015 mRNA upstream 26879 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014022 mRNA upstream 44602 49564964 ~ 49569099 (+) True AMCG00014022
AMCG00014009 mRNA upstream 56860 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014017 mRNA downstream 3393 49620633 ~ 49627765 (+) True AMCG00014017
AMCG00014025 mRNA downstream 12569 49629809 ~ 49633867 (+) True AMCG00014025
AMCG00014020 mRNA downstream 30558 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014018 mRNA downstream 36408 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014014 mRNA downstream 63281 49680521 ~ 49682420 (+) True AMCG00014014
TU60435 other upstream 68366 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other upstream 68366 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other upstream 68366 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other upstream 68366 49538054 ~ 49545335 (+) False AMCG00014010
TU60357 other upstream 266480 49345228 ~ 49347221 (+) False AMCG00013996
TU60533 other downstream 72432 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 81380 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 84011 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 85838 49703078 ~ 49703528 (+) True G48455
TU60542 other downstream 89603 49706843 ~ 49717428 (+) True AMCG00014032

Expression Profile