RNA id: AMCG00014022



Basic Information


Item Value
RNA id AMCG00014022
length 477
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00014022
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49564964 ~ 49569099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGGAAGAGGCTGAGCGAGATGGAAGCTGCTCAGATGCTCTTTGAATGCCCCTGGCtcgccCCACCCACTgTGTTTGAAGCAGGGAACACTATGGCTGACCGCAGAAAGACGGGGAAAAGCCGGAGGATGGGCTCCAGGAGGGGCCCCCGCAGccacaacagcaacaacctGGGCAACGAGAGGGACGAGGAGCACCTGGAGGGACTGAGGGAGGTGGagaggggagagcaggagagcgaagagaaagagaagaaagttACAGGACATCTGGCTGTAGAGAGTGGCTCCACCCCTCTGTCAGGACTCCACCAATCAGAGAGCCCGAACCCCACCAACCACCGAGCACGGAATCTAAGGAATCTGTGCCTGCTGAGCAGCTCCACCAATCGGAGATCTGCTTCCACATTGATAGGGCAGAGAACGCCACGCCTCTTGCCCAGCTCCACCAATCAGAGGAAGAGGAGCATGGAATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 80005 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 108266 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 111092 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 452881 49068105 ~ 49112083 (+) True G48243
TU60526 lncRNA downstream 110398 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 160572 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 177416 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 184485 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 224107 49793206 ~ 49793650 (+) True G48479
AMCG00014009 mRNA upstream 8123 49552159 ~ 49556841 (+) True AMCG00014009
AMCG00014010 mRNA upstream 20254 49540430 ~ 49544710 (+) False AMCG00014010
AMCG00014004 mRNA upstream 116213 49441384 ~ 49448751 (+) True AMCG00014004
AMCG00014005 mRNA upstream 145067 49413955 ~ 49419897 (+) True AMCG00014005
AMCG00013996 mRNA upstream 216363 49345097 ~ 49348601 (+) True AMCG00013996
AMCG00014015 mRNA downstream 1102 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014013 mRNA downstream 19078 49588177 ~ 49594866 (+) True AMCG00014013
AMCG00014016 mRNA downstream 41258 49610357 ~ 49613183 (+) True AMCG00014016
AMCG00014021 mRNA downstream 47897 49616996 ~ 49620027 (+) False AMCG00014021
AMCG00014017 mRNA downstream 51534 49620633 ~ 49627765 (+) True AMCG00014017
TU60435 other upstream 19629 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other upstream 19629 49538054 ~ 49545335 (+) False AMCG00014010
TU60437 other upstream 19629 49538054 ~ 49545335 (+) True AMCG00014010
TU60438 other upstream 19629 49538054 ~ 49545335 (+) False AMCG00014010
TU60357 other upstream 217743 49345228 ~ 49347221 (+) False AMCG00013996
TU60500 other downstream 44602 49613701 ~ 49617240 (+) True AMCG00014021
TU60533 other downstream 120573 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 129521 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 132152 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 133979 49703078 ~ 49703528 (+) True G48455

Expression Profile