RNA id: AMCG00014023


Basic Information

Item Value
RNA id AMCG00014023
length 3430
RNA type mRNA
GC content 0.64
exon number 14
gene id AMCG00014023
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49595783 ~ 49607194 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATCAGGCCCCTGCAGAGCGGGGCGACTGGGCTCTCTGATGGAGCTGCGGCGCGGCTCCCCGGCCAAGCACTTCGAGGACCTGACCCTGGACTCTGGGTATGGCGGCATGGCCGGCTCCTGCCGCTCCTCGGTGCTGTCGCTGTCCCCCTCCCACCTGGACGCCCCCCCCGGGCCCGACAGCGGGCTGTGGACTCTGCCAGGGGACGGGCCCTTCAGGGAGGGGCTGGCCGGCGGCGTGGGGTGCCACCAGTGTGTAGAGGGGCACCCCGAGGGCCTAGAAGGGACCTGGCCCAAGCTGCCCCCGCTGGACAGCCTGCCGTGGGCGGAGGAGTTGGTGGGTGCCGTGGTGCGCCGGTGCCTGCCCCGCTGGGCTGTGTCCGGGCCGCTGCTGGTGCGCCTGTCCCGGTGCCTGGGCCGGGTGCTGTGGCGGCTGTGCCAGGAGGCCCGGCGGCTGAGCCTGCAGTGTGGCCAGTGCTCACAGCATGAGGTGCGCACGGCCGCCAAGCTGCTGCTGTCCTGGACGCTGTCCGAGGCCTGGGTGGCGGCAGGGCGCCGGGCTCTGTCTGCGCGGGAGATGAGCGTGGACGAGCCACACGCCCGGGGGCTGAGCGCGAGGGCCGGCCTGGTGCTGCCCGCCGGCCGGCTGTTCCGTTGGTTGGTGGAGGCCCGCGTGGCGCCCCGCGTGCAGGAGGAGGCGGCGCTGGACATGGCTGCTGGGCTGCAGGCGCTGCTGGAAGAGCTGTGCGAGAGGCTGGACCGGCAGGGGCCGCCCGGGGACAACGAGGCCGCGGCCCTGGAGCAGCTGCTGAGAAGTGACCCTGAGCTGTGGGGCCTGTGCCAGCCCTACCAGCACCTGCTGTGCGGCAAGACGGCCTACGGTGTGCCAGTCCTGCCCTCGTACCTCGCTGCGTACCCTTGCGGGTCCCTGGGCCGCCCCCCCCGCGCACCCCCCCTGCGGCCCTCCGAGCTGCAGAACCTGGAGCACAGCCTGCTGACCTGCTCCGTGGACAGCGTGGCCGAGCTGAGCGCCCTGGTGGTGAACTCTATGTACGCTCTGCAGCGGCTGGGCTCACACGGCGCCGCCGGGACCTTCCAGCTGCACTTCAGAGAGGGGGTGCTGTCAGAGGTCACGCAACCGCCCCTGGCTGAGTGGCTGCGCGTGTGTGTGGCGCTGGCGGAGCACCGCTTCAGCCCCACGGTGGACAGCGCTGACGTCACACAGGCTGCCCGGCTGCTGCTGCCCGGCGCCGACTGCCCGCCTCGCCCACTCAGTATCGCCCAGCTGCTGCTGGAGTCTGGGGCCGATGTGGACGGAGGGGGCAGTGAGGGGGAGCCGGTCGAGACGCCTCTACAGCTGGCAGCCGCCGCAGGTCACGAGGAGCTGGTCTCCCTGCTGCTGGAGCACGGCGCCGACCCTCTCTCTGGAACCTCCAGTAAGACAGTGGGTGCCACCTCACTGCGGGGCACCTCCAGCGCCTTCTCCCTGGCAGCAGCGCACGGGCACAGGGACGTGCTGCGGAAACTGCTGTCCCAGCCGGAAAATGACATCCTGACGCTGGAGGACATGCTGGCGGAGGGGGCGGCCGAGGCGGGCGAGGCGGGCAAGGCGGGGGGGCAGAGCCGCAGTGGCCGCGCGCGTCGGAGGGCCCTGCAAGAGGCGCTATACCTGAGCGCTGAGCACGGCTACCTGGACATCGCCCTGGAGCTGCGGCAGCAAGAGTCAGTGCCCTGGACGCTGCATAGCTGGCTGCAGTGTGTGAGAACCTCCTTTTGCCAGCGCCGCTGGGACGTGACGCACAGCCTGCTGGGAGATTTTTCGTCGCTGAAGGAAGTGTACAGTGAGGAGATGCTGAACGAAGGGCTGCCTCTGCTCTTCGACATCCTGCTCTCCTGCCAGAGTGAGTCCACCGTGCAGCACCTGGCGTCTATCCTGTCCTGCTGCTACGGCCCCTACCCCCCCCCAACAGTGCACGACAGTGCCCCCCCACGGCACGCACGACTCGACCCCGCCCTCGTGAACAGCAGAGAGACCGCAGACCTCACCTTCCTGGTGGAGGGGAAGCCTTTCTACGCACACAGGGAGGTTGTGACCTCGGCGTCTCCCAGCCTGCAGAAGCTCGTCTCTAAGGCCACTCCCTCTGCCCAGGTGGAGATCCCGGATATCAAGTACAGCACCTTCCAGGTCCTCCAGGCTGCCCACTCGCTCTGTCTGCGGCCCCTGAAGAAGCACTGTGAGATGCTCTGCTCCAAATACCTGCACCCCAGCGACGCCGCCACCTTCTACCAGCAGGCCCAGCTGTGCCAGGCCCGGGATCTCAAGGCGTTCTGTGAGGGCTACTTCCTGAAGAACCTGCCGGTGCTGCTGGAGGTTGGCTCCTTCCGGCGCCTCCTGCTGGCGGGAGACGGTGCCGCAGCCGACGAGGGCCTGGGTCACGACCTCCTGCGCACTCTGTCCTCCAGGATGAACGCCATCCACCAGCCCCTGGCCAAGGAGACCATGGTGTAGAGCGTGAGGGCAGGGCTCCGCCGGGCCAAGCTGGCACGGATCATACCAGGATGTCCTTTGAGTTGATTCGATCTTGTTTATGTCATGCGTTGTCTGACGGTCAGCGCCGGCGCCGGTCCACATCGGCCCACACACCAGCGCCACCTCCTGCCTCGGCTGTGTTTGAATTTGTGCTTTTATATCTATTCTTTGAAATAACAGGAGCACAGATTTTATGACGTTCCTGTTCTTAACTGgggtttaaacaatgtgaagaagaaacaatacaatataataataatgctgtgaCGGCAGCTGTGGGCACCCCCTGGTGTTGGGCTCCCTGAAGCTCCAGCCCCCCGCAACTGATCAATCTGCCAAGCAATAATCTTTCATTTAAGCGCCTGTCAAGCCAAGGAATGCCAACGCTGCGCATGAAcgacaaaacacaacacaagcagCGACACAGGCAGCAGGCGCCCCCTGGACAAGATCTTCCCCGATAAGACCGCACTGCCCTGAGCCGGCACCTGGACACTTGGACGCCCACACAAGCAGGACAGTTCGGTGGGGCACGGGACCGTTTGAACACTTCCTGCCCCCTCTCAGGCCGGAGCGCGGAGTCAGGGGCCGTCTGAGCGGCTTTTCATTGCAGGGACTGTCCTCCAGATAGGGGTGTGTTTTTCCCCTGTGGGGGACCCCTCTGTTGAGTTGTGTCTGCACCCCCCTGCCCCGTGTCCGCATTACGAAACTGACGTGCAATACTGTGAATTCAACATTTCCCTTCCTTTACAGCTTCAGGaaagttttattatattttattttattttattttatggaggCTTTCGTTTTATTTAAGgtaatttttttatgtttgtacaGAAATCTAAAGTTATATAATAACaaatgattataaaataaaagtcgCCTCTATGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60464 lncRNA downstream 710 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA downstream 50505 49541359 ~ 49545278 (-) True G48398
TU60417 lncRNA downstream 141911 49453033 ~ 49453872 (-) True G48370
TU60404 lncRNA downstream 241248 49353692 ~ 49354535 (-) True G48363
TU60289 lncRNA downstream 545351 49027284 ~ 49050432 (-) True G48275
TU60502 lncRNA upstream 6502 49613696 ~ 49613974 (-) True G48430
TU60506 lncRNA upstream 11083 49618277 ~ 49618955 (-) True G48433
TU60512 lncRNA upstream 14903 49622097 ~ 49623191 (-) True G48437
TU60514 lncRNA upstream 16616 49623810 ~ 49627767 (-) True G48439
TU60588 lncRNA upstream 55898 49663092 ~ 49675750 (-) True G48494
AMCG00014012 mRNA downstream 37023 49557804 ~ 49558760 (-) True AMCG00014012
AMCG00014011 mRNA downstream 73163 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014006 mRNA downstream 109341 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014008 mRNA downstream 125651 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014007 mRNA downstream 132613 49456627 ~ 49463170 (-) True AMCG00014007
AMCG00014024 mRNA upstream 71126 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014034 mRNA upstream 82485 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014035 mRNA upstream 90667 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014033 mRNA upstream 115881 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014036 mRNA upstream 143274 49750468 ~ 49757241 (-) True AMCG00014036
TU60452 other downstream 97153 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 111016 49484500 ~ 49484767 (-) True G48373
TU60179 other downstream 774627 48817983 ~ 48821156 (-) False AMCG00013991
TU60601 other upstream 112571 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 121310 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 137752 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 257130 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 263799 49870993 ~ 49873375 (-) False G48570

Expression Profile