RNA id: AMCG00014024


Basic Information

Item Value
RNA id AMCG00014024
length 1500
RNA type mRNA
GC content 0.71
exon number 4
gene id AMCG00014024
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49678320 ~ 49680362 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTGCTGGCGGGGGAAGacGTGCGCTTCATAACAGAGGAGACGTTTGATTTCAGCCTCGACTCGCCGTCAGACAGTCGGGAGCTGCAGGACGCttgcgaggaggaggaggtgttGGTGGGGCCAGTGCGGCTCGCCGGGCGCTGTGTGGCGAAGACTCTGGACCTCAACGTCCCAGAGGCGGAGCTTCTGCAGGGGGCCAGGGGGGCCGGGGCGCCGAGCTGGAGCCCCCTGAGCGCAGAGCGGCTGGAGCAGATATCCCTGGAGGCGAACCGTCTGGCCCGGCAACTGCGTCGCGGCGCGCGCAAAGAGAACGGCGGGGGGGCGGAGCCACGCTGCCCGCGCCGGGAGACCTATGTGGTGAGAGACAGTCCGGTGAAGGACCTGCTGCCCTCCATCTCCCCAGCACCCATGGCCGAGGGGCCCTCCTGCCCCGCTGCCCCCCCGAGCGGTCAGTCTCCGCCCCGCAGCGGGGCCACAGGCAAGGCCACAGGCAAGGCCACAGGCAGGGCCCAGCCTCCTCCCAGCAGACCGGCTCCCAGCAAGGCAGCTAAACCCCCTCTGCCACAGCCCAGGGCTGCCATGGTGACAGACACAGCTGGCCCCCGCTCTCGGGCCCCCCCTGCCAGACGCCCTGGCGCGCTCTCCCCCAGCTTCACCCGGGCACCCCTCATTCCGCCCCGCAGCCCCCCAACCCCGGCCACCACGCCCCCCACGGCGCCGGGCAGCTCAGACACGGAGGGCAAGCAGGCCCGGCCGAACCCCCTGAATTCACCCCGACCCCAGCTGGAAGACGGGAAGAAGCCCCCCAGGAAGACGAGCGCCGCCGCCGATGCCCCCCAAGGGGCTCTCGAATCCTCAGCCATGAGGAAACCGGCCCCCAGCAGCGCCCCCCACCCCTACCAGTCGGAGCTGTGCAGGAACCCGGGTGCAGCCAAGAGATGCGCCCCACCCGGACCGGACCGGCGTCCCCAGGCCCGGAGAACCGCCATCCCGGCTCTGCGGCCGACCCCCCCCTCCGGCATCCCCAAACATGGCGGCAGGGCGGCCACACTGGGGCCCCTGCCCCCCCCGATGGCGGCACAGACAGGTGAGTCTCCTGGGGCGGGTGGGGGGGCTCCAAGTGCAGCTGCGTGTCGACGCCTGCCCGGCCCTGGCCCCGGCCTCATGCCCCATCTGTGTTTCAGCTGCCCCCCCCCGGGCCTCCCAGCTGCCTACCTACACCGGACGGAGCCGCCTGGTGCCCCCAAGGGCCCTGCCCAGAGTGGGGGGGCCACTGTGAGCACAGGCTCCGGGGCTGACGACGCTCCTGTgaagacccccaccccccaggccCATCTGCACAGACTGGGGACAGATGGACGGACGCAGCTGGTCTTCCTGCTCTTGGCCGTCTGGATGCGCAGGAGCTTGGCCAAAACCGTGCCCCCACGGCAGCAGGCCGTGTTCATCGCCGGGCACCACCCCCCAGCCCAGGCTGTTGCAATGTGCGAGTGA

Function

GO: NA

KEGG:

id description
K21443 PSRC1; proline/serine-rich coiled-coil protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60588 lncRNA downstream 2570 49663092 ~ 49675750 (-) True G48494
TU60514 lncRNA downstream 50553 49623810 ~ 49627767 (-) True G48439
TU60512 lncRNA downstream 55129 49622097 ~ 49623191 (-) True G48437
TU60506 lncRNA downstream 59365 49618277 ~ 49618955 (-) True G48433
TU60502 lncRNA downstream 64346 49613696 ~ 49613974 (-) True G48430
TU60602 lncRNA upstream 41384 49721746 ~ 49723854 (-) False AMCG00014033
TU60603 lncRNA upstream 45373 49725735 ~ 49726249 (-) True G48508
TU60604 lncRNA upstream 45926 49726288 ~ 49727007 (-) True G48509
TU60607 lncRNA upstream 53547 49733909 ~ 49734172 (-) True G48512
TU60612 lncRNA upstream 64584 49744946 ~ 49747551 (-) False G48516
AMCG00014023 mRNA downstream 71126 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014012 mRNA downstream 119560 49557804 ~ 49558760 (-) True AMCG00014012
AMCG00014011 mRNA downstream 155700 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014006 mRNA downstream 191878 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014008 mRNA downstream 208188 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014034 mRNA upstream 9317 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014035 mRNA upstream 17499 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014033 mRNA upstream 42713 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014036 mRNA upstream 70106 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014046 mRNA upstream 102910 49783272 ~ 49788746 (-) True AMCG00014046
TU60452 other downstream 179690 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 193553 49484500 ~ 49484767 (-) True G48373
TU60179 other downstream 857164 48817983 ~ 48821156 (-) False AMCG00013991
TU60601 other upstream 39403 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 48142 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 64584 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 183962 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 190631 49870993 ~ 49873375 (-) False G48570

Expression Profile