RNA id: AMCG00014025


Basic Information

Item Value
RNA id AMCG00014025
length 4059
RNA type mRNA
GC content 0.66
exon number 1
gene id AMCG00014025
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49629809 ~ 49633867 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTCCGGGGCCGGTCCTGTCTGTCGTCTCCTGTGTCTCCTCTCCTCCGCCGTCAGGAGCGCTTTATGGTAATCAGCCGCTCGCAGGcgcaggcagcagcagcagcggcggcGGCGCGGAGCCATTTTGAGGAGAACAATCGAGAGGAGAGACGCGGAGCCGCCGAGCGGCGGATAAAGACGCCGACAGACAGACGCGTCCGTTCGCGTCCCGCAGCTCCTTCCAGGTTTTCCGGGTTTTCCAGGTTTTCCaggtttcctttgtttttgtgttgttttgtccCTGCCGTGGCAGCATGGGGACGGCGCCGCAGCGCAGGAGACCGGCTCGGAGGAAAGTTTGAGCGGCGTCTGCGGAAAACAGCTACGATAACCtccagagccagagagagagccAGAGCCGGAGACGGACAGAGGGACCGGGCGATGGGGCGACCCTCCAAGGGGACCATGCGGGTCCCGCACTGGGCTCTGCTCTGCACCTGCGTGCTGGCGCTCTCCGCGCTGTCCGACTGCTACCGCGTCCACCTCGGCGAGGGCGCCGCACCCGGGACGCTGCTGGCCAGCCTGGGACCGGGCAGCACCTGCCGGCTGGATCAGGTGATCGGCCCCCGATTCACAGACGCGCTGCTGGAGACGGACGCGGCGGCCGGCACGGTGTCCCTCTCCCAGGCGCTGCGCTGCGCCCGGCTGCCCCTAAACCCCTTCACCCTGTACACCGCCGCTCACTGCCCCGGCGCGCCGGGCTTCAGCCACTTCGTCGCCAGCCGCTACGAGGTGCATCTCCACGGCAGGAGCTGCTTCTCCAAGCACCGGAGGAAAGCCACCCGCGACGTGGATGTAATCAGCCTGCTGCCCCTGCACAGCCCCCAGCCACAGTGCTACCAGCCCGGGGCTCTGCTGTTCGGCGTCGGCGAGCTCCTGCCAGGCTGGCTGGCCCCCTGCGGCTTCCCCTGCAGGGTGGCGGGTGACCCCGGAGTGCACTTCTCCGACAGCGGGCTGTTCGCCTCCCGCCGCCTGTGTCTGCAGCGCAGCTCCCTGCTGGCCCTGGACATGCAGTGCGACAGGTGCGTGGGGGAGGGGCCCGGGGCCCAGGGCCCTGTGTCGGTGCTGTGGCGGATCGGACTGGGCTCCTTCAGGCAGCAGCACCTGCACCGGCTGCTGCGCCTGGCCGCGCACTCCCCCGCTGGGCTGGtcagcaggaggaagaggaacgTCAACTCCAGCCCGCAGTTCCAGCCGCCCATGTACCAGGTGGCGGTGCCAGAGAACCAGCCGGCAGGCACGGCCGTGGTGCTGCTGCGGGCGGTGGACACGGACGAGGGTGAGGCGGGGCGGCTGGAGTACTCGATGGATGCGCTGTTTGACAGCCGTTCCAACAGCCTGTTCAGCCTGGACCCACAGACGGGCGCGGTCAGCACCGCCCAGCCTCTGGACCGTGAGACCAAGGACACGCACGTGTTCCGGGTCACGGCTGTCGACCACGGCTCCCCGCGCCGCACCGCCATGGCGACGCTCACCGTGTCGGTCAGCGACACCAATGACCACGACCCCACCTTCGAGCAACAGGACTACCGGGAGAGCGTGCGCGAGAACCTGGAGGTGGGCTATGAGGTGCTGACGGTCCGGGCCACCGACGGGGACGCCCCGGCCAACGCCAACATCCTGTACCGCCTCCTGAACGGCAATGGCTCCAACAGCGTGTTCGAGATCGACCCGCGCTCCGGAGTGATCCGCACGCGCGGCACGGTGGACCGGGAGGCGGTGGAGGCTTACATGCTGCTGGTGGAGGCCAATGACCAGGGCCGTGACCCTGGGCCACGCAGCGCCACCGCCACTGTCTCCATCACGGTGGAGGACGACAACGACAATGCGCCGCAGTTCAGCGAGAAGCGCTACGTGGTGCAGGTGCCTGAGGATGTGGCGCCTGGCACAGAGGTCCTGCAGGTCAGTGCCAGCGACCGTGATCGTGGCAGCAACGCCGTGGTCCACTTCAGCATCATGAGCGGCAACACGCGGGGCCAGTTCTACATCGACGCCCAGACCGGCAAGGTGGACGCGGTCAGCCAGCTGGACTATGAGGCCAACAAGGAGTACACGCTCCGCATCCGTGCTCAGGACGGCGGCCGCCCCCCCCTGTCCAACATCAGCGGGCTGGTGACGGTGCAGGTGCTGGACATCAACGACAACGCACCCATCTTCGTCAGCACGCCCTTCCAGGCCACCGTGCTGGAGAACGTGCCGCTGGGCTACTCTGTCCTCCACATCCAGGCCATCGACGCCGACTCGGGCGATAACGCGCGGCTGGAGTACCGGCTGCTGGACGTGTCGCCCGGCTTCCCCTTTGCCATCAACAACAGCACGGGCTGGATCGTGGTGGCGGCCGAGCTGGACCGTGAGACCGTGGACTTCTACAGCTTCGGCGTGGAGGCGCGCGACCAGGGCAGCCCGGCTATGTCCTCCTCCGCCAGTGTCAGCATGACCATCTTGGATGTGAATGACAACAACCCCGAGTTCACACAGAAGTCCTACAGCGTGCGGTTGAACGAGGACGCGGCGGTGGGCAGCAGCGTGGTGACGGTGTCGGCGGTGGACCGCGACGTCAACAGCGTGGTGACCTACCAGATTGCCAGCGGCAACACACGCAACCGCTTCTCCATCACCAGCCAGAGTGGCGGCGGCCTGGTCACGCTCGCCCTGCCGCTAGACTACAAGCTGGAGCGGCAGTACGCGCTGAGCATCACCGCCTCCGACGGAACCCGCTCCGACACGGCACAGGTCTTTGTCAACGTCACGGATGCCAACACACACCGGCCCGTGTTCCAGAGCTCGCACTACACAGTCAACATCAACGAGGACCGGCCCGTGGGCACCACCGTGGTGGTCATCAGCGCCACGGACGAGGACACGGGCGAGAACTCCCGCATCACCTACTTCATGGAGGACAGCATCCCGCAGTTCAGCATCGACCCCGACTCGGGCGCCGTCACCACGCAGACGGAGCTGGACTACGAGGACCAGGTGTCCTACACTCTGGCCATCACCGCCCGCGACAACGGCATCCCGCAGAAGTCCGACACCACTTATCTGGAGATCCTGGTGAATGACGTGAACGACAACGCGCCCCAGTTCCTGCGTGACCGCTACCAGGGCTCGGTGCTGGAGGACGTGCCGGCCTTCACCAGCGTGGTGCAGGTGTCCGCCAGTGACCGCGACTCGGGGCTCAACGGCCGCGTCTTCTACACCTTTCTGGGCGGCGACGATGGCGACGGCGACTTCATCATTGAGTCGACCTCGGGCATCGTGCGCACGCTGCGCCGGCTGGACCGCGAGAACGTGCCCGTGTACGAGCTGCGTGCCTTTGCTGTGGACAAGGGCGTGCCGGCGCTGAAGACACCCGTGGACATCCAGGTGTCGATCCTGGATGTCAACGACAACCCGCCCGTATTCGAGAAGGACGAGTTCGACATCCTGGTGGAGGAGAACAGCCCCATCGGCCTGGTGGTGGCGCGGGTCACGGCCTCGGACCCCGACGAGGGCAGCAACGCACAGATCATGTACCAGATTGTGGAGGGCAACATCCCTGAGGTCTTCCAGCTGGACATCTTCTCCGGGGAGCTGACCGCCCTGGTGGACCTGGACTACGAGAGCAAGGCGGAGTACGTGATCGTGGTGCAGGCCACCTCCGCGCCGCTGGTCAGCCGCGCCACCGTGCACATCAAGCTGGTGGACCAGAACGACAACCTGCCGGTGCTCAAGAACTTCCTCATCATCTTCAACAACTACGTCACCAACAAGTCTAGCAGCTTCCCCACCGGTGTGATTGGCCGCGTCCCTGCCCACGACCCCGACGTCTCAGACACGCTGCGCTACACCTTCGAGCATGGCAACGAGCTGGACCTGGTCATCCTCAACAGCAGCACCGGGGAGATCCGGCTCAGCAGCGCGCTGGACAACAACCGGCCCCTGGAGGCCACCATGACAGTGTCTGTCTCCGGTAAGAGCCGGgcttctctctccctgctgcggggtgtgtgtgtgtgtgtgtgtgagtga

Function

GO: NA

KEGG:

id description
K04601 CELSR2; cadherin EGF LAG seven-pass G-type receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60422 lncRNA upstream 144850 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 173111 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 175937 49453033 ~ 49453872 (+) True G48353
TU60257 lncRNA upstream 517726 49068105 ~ 49112083 (+) True G48243
TU60526 lncRNA downstream 45630 49679497 ~ 49679876 (+) True G48449
TU60545 lncRNA downstream 95804 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 112648 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 119717 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 159339 49793206 ~ 49793650 (+) True G48479
AMCG00014017 mRNA upstream 2044 49620633 ~ 49627765 (+) True AMCG00014017
AMCG00014021 mRNA upstream 9782 49616996 ~ 49620027 (+) False AMCG00014021
AMCG00014016 mRNA upstream 16626 49610357 ~ 49613183 (+) True AMCG00014016
AMCG00014013 mRNA upstream 34943 49588177 ~ 49594866 (+) True AMCG00014013
AMCG00014015 mRNA upstream 42987 49570201 ~ 49586822 (+) True AMCG00014015
AMCG00014020 mRNA downstream 13931 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014018 mRNA downstream 19781 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014014 mRNA downstream 46654 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014019 mRNA downstream 52941 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014027 mRNA downstream 61399 49695266 ~ 49697020 (+) True AMCG00014027
TU60500 other upstream 12569 49613701 ~ 49617240 (+) True AMCG00014021
TU60435 other upstream 84474 49538054 ~ 49545335 (+) False AMCG00014010
TU60533 other downstream 55805 49689672 ~ 49692361 (+) True G48451
TU60535 other downstream 64753 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 67384 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 69211 49703078 ~ 49703528 (+) True G48455
TU60542 other downstream 72976 49706843 ~ 49717428 (+) True AMCG00014032

Expression Profile