RNA id: AMCG00014026


Basic Information

Item Value
RNA id AMCG00014026
length 1774
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00014026
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49703711 ~ 49706258 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACGCCGGATGTTCTTGCTCTCGGGGCTCGGTGGCGTGCAGAGATGGGGGTGACTTGtgtgtgccAGGTGCCTGTGTCCGAGGGGAAGAGTGTGCAGCAGACAGTGGACGTGCTGCACAGGAAGCTGGAGCAGCTGGGGGCAGTGAAGCAGGGCAGCTTCACAGTGGACTGTGAGACGTACCACACTGGGGCCGGCAGCATGGGCACTGCGGgaCAGCCGGCGAAGTTCCTGTATGTGATGCACAACTCGGAGACGCCACTGAGCTGCTTCGCTTTGTTCGAGGGGGGACCCTTTCTGGCCGCCGACCCCAACTTCGACGTGCTGATGGCCAAGCTCAAAGGCCACTTCCAGAACGCCAAGGGCCACAAGGTGGAGAGCCGCGGCACGCGCTACCTCTACTGTGACTTCCTGGTCAAAGTGGGCACCGTCACCATGGGCTCCAGCGCCAGGGGCATCTCCGTGgagGTGGAGTACTGCCCCTGCGTGGTGCCCAGTGACTGCTGGAACCTGATGAAGGAGTTCATGGTGAGCTTCTTGGGGCCCCATGCCCCCGAGCTGCCCAGCGCCTTCACCGCCAAGCCCGACGGCCTGTACAGCCCCGCCGAGGGCGCCGACACCATGGCACAGTATCTGGAGCTGTTCGGCAAGGTACGCAAGCAGCAGGTGGCATCTGGTGGAAGCATGCGCTGAGGAGGGGGCAGAGGCCACTCTCGGGGTCCGACACACAGGACTGCTTGAGCGGCTCTGTGCACAGGATCTATTCTCAGCCACCCCTCCTGAGTACCCGAGTGTGGGTCTGGACTGAGGATGGGACACTGACTGGCTCCGGGGGGGAACCCAGATGTTCTCGGATAACAGCGCCTGGTCCCGCTCTCAGGAGGTGTTGTAACCAGGCGTGTTTTCTAGGGTCTGGTGGAGTCAGCCactgtgttttcttattttttggtcACCATCTGAACTGGCTTTGTACTGCATTTCaagtaaaactttatttttacataattaaagtCTGGGTGTATTtttctgcagagagagacagattaaACAGGCTGCCGGTCTGTTCTGTGTGGATCTCCATGTTGGGGActtgatttagattttaaacataaatcagatgcctaaaacaaaacaataaaacagtggaTTGAATTTACCAAtgatgtgaaataaaacaattagttCTAATTCCTATAgaaaagatacattaaaaattttaataacattttattatttcttgggaattctgttttttgtgtccGTATGACTCTTTGGCTGCCCTGTGCCACACTCGTATTTGTACATTGAAGGGATTATGATGTTAGAACGGCTTAATTAGCCATATGGGCTGTTTCCACTGTATGATCAGCTCAGCTGTAGATAGTTGACTCATTGTGTTTGCACTGCTGTaatgttgtatatataatacGGTGCAGTGTAATCTATTGTAGTGTAGTAATGCTGTTAATTACATACTGTGGTATTAGAACGGCTTCTGACATAAATATACTACTTCCATCCTGTCATAGACTCGAACACACCTGCCTGTATACTGCCAGCACTAATCCACTTACTGTCACACCATTTCTTAGGCACATACTCCTAACCTGCTTTCTCCCACTTACTCTAAGCTAGTAACTCGCGCTGATGGTGGGCTGCACACTAGCCCCCAGGCAGCGCCCCCAGGCCCGAGCCCCTCACATGCGGTGTGCTGGGGTCCTGCAGCGCTAGGACCGTGTGTGCGATGGGGTCGGGGTTTCCACGGCCCTGTCGG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K13528 MED20; mediator of RNA polymerase II transcription subunit 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60526 lncRNA upstream 23835 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 218752 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 247013 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 249839 49453033 ~ 49453872 (+) True G48353
TU60247 lncRNA upstream 608165 49090314 ~ 49095546 (+) True G48235
TU60545 lncRNA downstream 23413 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 40257 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 47326 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 86948 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 101890 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014027 mRNA upstream 6691 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014019 mRNA upstream 15054 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014014 mRNA upstream 21291 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014018 mRNA upstream 29960 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014020 mRNA upstream 50549 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014032 mRNA downstream 603 49706861 ~ 49716881 (+) False AMCG00014032
AMCG00014029 mRNA downstream 11256 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014030 mRNA downstream 30156 49736414 ~ 49738159 (+) True AMCG00014030
AMCG00014028 mRNA downstream 33054 49739312 ~ 49749169 (+) True AMCG00014028
AMCG00014037 mRNA downstream 64335 49770593 ~ 49771894 (+) True AMCG00014037
TU60537 other upstream 183 49703078 ~ 49703528 (+) True G48455
TU60536 other upstream 1768 49701251 ~ 49701943 (+) True G48454
TU60535 other upstream 4089 49698620 ~ 49699622 (+) True G48453
TU60533 other upstream 11350 49689672 ~ 49692361 (+) True G48451
TU60500 other upstream 86471 49613701 ~ 49617240 (+) True AMCG00014021
TU60542 other downstream 585 49706843 ~ 49717428 (+) True AMCG00014032
TU60541 other downstream 16768 49723026 ~ 49723876 (+) True G48457
TU60549 other downstream 35594 49741852 ~ 49742514 (+) True G48464
TU60679 other downstream 207671 49913929 ~ 49914542 (+) True G48566
TU60704 other downstream 230557 49936815 ~ 49948082 (+) True G48578

Expression Profile