RNA id: AMCG00014027



Basic Information


Item Value
RNA id AMCG00014027
length 975
RNA type mRNA
GC content 0.69
exon number 5
gene id AMCG00014027
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49695266 ~ 49697020 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACCTCGTGTGTCTGGAAGACTGCCGGCTCCAGCCCAGCCCTCCCCGCCGCCACTGCCCGGCGGCGGTGCAGCCCGTGGCGGTCGTGCGGGCCCACACGGACCCGGCCCTGACCCGGGACGCCCGGGTGCTGCGCAACCTGCTCCTGCTGGAGGAGAAGTCGCCGCCCTGTCACTCGTACTTCGCCCGCGTCCAGACCGACATCCAGCCGCACATGCGCAAGATCCTGGCCGAATGGATGCTACAGGTGTGTGAGGAGCAGAAGTGTGAGGAAGAGGTGTTCCCTCTGGCCATGCGCTACCTGGACCGCTACCTGTCCTCCTTCGCCGTGTCCCGGACCCGGCTGCAGCTGCTGGGCGCCGTGTGCATGCTGCTGTCCTCCAAGCTGCGCGACACGGTGCCCCTGACCGCCGTGCAGCTCTGCGCCTTCACAGACCACGCCGTGACCCTGCGCCAGCTGCTGGTAACCACCTGGGGCTGGGGCTGTTCGAGGGACTGGGAGCTAGTGGTGGTGTCCCGGCTGCGCTGGGACCTGGCGCTGGTGGTGCCCTCGGACTTCCTGGAGCTGATCCTGCAGCGGCTGCCCGACCTGCCGGCAGCTCAACACGGCCTGGTGCGCAAACACACCCATATCTTCATCGCACTGTGTGCCACGGAGCTGAAGTTCTCCATGTACCCGCCCTCCATGATCGCCTCGGCCAGCGTGGGAGCGGCCGTCCGTGGCCTGCGGCTGCCCGACTCTGCGCTGGACAGTGATGCGCTGATGGAGCTGCTGGCCAGGGTCACTGGCTCGGACGTGGACTGCCTGCGCTCGTGTCTGGAGCAGATCGAAGATGCTCTGAAGCAGCACCTGCCGCCGGCCGCCCCACCCGAGCCCCGCTGCCCCAGCTCCCCCCAGCCCAGCCCCGCCGGGACCCCCACCGATGTGCGTGATGTGCGCCTGACGCCCCCCTGCCTCGCGCCGGCCCCGTGA

Function


GO:

id name namespace
GO:0007049 cell cycle biological_process

KEGG:

id description
K10151 CCND2; G1/S-specific cyclin-D2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60526 lncRNA upstream 15390 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 210307 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 238568 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 241394 49453033 ~ 49453872 (+) True G48353
TU60247 lncRNA upstream 599720 49090314 ~ 49095546 (+) True G48235
TU60545 lncRNA downstream 32651 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 49495 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 56564 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 96186 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 111128 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014019 mRNA upstream 6609 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014014 mRNA upstream 12846 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014018 mRNA upstream 21515 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014020 mRNA upstream 42104 49647798 ~ 49653162 (+) True AMCG00014020
AMCG00014025 mRNA upstream 61399 49629809 ~ 49633867 (+) True AMCG00014025
AMCG00014026 mRNA downstream 6691 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014032 mRNA downstream 9841 49706861 ~ 49716881 (+) False AMCG00014032
AMCG00014029 mRNA downstream 20494 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014030 mRNA downstream 39394 49736414 ~ 49738159 (+) True AMCG00014030
AMCG00014028 mRNA downstream 42292 49739312 ~ 49749169 (+) True AMCG00014028
TU60533 other upstream 2905 49689672 ~ 49692361 (+) True G48451
TU60500 other upstream 78026 49613701 ~ 49617240 (+) True AMCG00014021
TU60435 other upstream 149931 49538054 ~ 49545335 (+) False AMCG00014010
TU60535 other downstream 1600 49698620 ~ 49699622 (+) True G48453
TU60536 other downstream 4231 49701251 ~ 49701943 (+) True G48454
TU60537 other downstream 6058 49703078 ~ 49703528 (+) True G48455
TU60542 other downstream 9823 49706843 ~ 49717428 (+) True AMCG00014032
TU60541 other downstream 26006 49723026 ~ 49723876 (+) True G48457

Expression Profile