RNA id: TU60518



Basic Information


Item Value
RNA id TU60518
length 289
lncRNA type sense_over
GC content 0.65
exon number 3
gene id AMCG00014028
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49739312 ~ 49749169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTTTAACCCCGCCCCCACGCGGCGCGTTACACAAGCTGCTGCGGCGCTGCTGGGGGTCGGACGGTCGCTGAGCTGCTGCTGTAAAGtgatGTGGGCCCATGCTCTGGGGTTCAGTGCGCTGCCCCACCTGGGGGGCTTCGTGGGCTGGCTGTACACACGCCGAGCGGTACCCACCTGGTACGAGACGCTGAAGAAGCCGTCCTGGCGCCCCCCCAATCGCGCCTTCCCCATTGTGTGGACAACACTGTACACCAGCATGGGGTACGGCTCATACCTGGTGTGGCGANN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60545 lncRNA upstream 14715 49729671 ~ 49731800 (+) True G48460
TU60526 lncRNA upstream 66639 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 261556 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 289817 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 292643 49453033 ~ 49453872 (+) True G48353
TU60553 lncRNA downstream 5997 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 45619 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 60561 49808148 ~ 49810966 (+) False AMCG00014038
TU60664 lncRNA downstream 109893 49857480 ~ 49857687 (+) True G48552
TU60672 lncRNA downstream 123519 49871106 ~ 49873377 (+) True G48560
AMCG00014030 mRNA upstream 8356 49736414 ~ 49738159 (+) True AMCG00014030
AMCG00014029 mRNA upstream 17523 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014032 mRNA upstream 29634 49706861 ~ 49716881 (+) False AMCG00014032
AMCG00014026 mRNA upstream 40257 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014027 mRNA upstream 49495 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014037 mRNA downstream 23006 49770593 ~ 49771894 (+) True AMCG00014037
AMCG00014031 mRNA downstream 24574 49772161 ~ 49772784 (+) True AMCG00014031
AMCG00014038 mRNA downstream 60984 49808571 ~ 49813985 (+) True AMCG00014038
AMCG00014040 mRNA downstream 89838 49837425 ~ 49842315 (+) True AMCG00014040
AMCG00014050 mRNA downstream 162971 49910558 ~ 49916242 (+) True AMCG00014050
TU60549 other upstream 4001 49741852 ~ 49742514 (+) True G48464
TU60541 other upstream 22639 49723026 ~ 49723876 (+) True G48457
TU60542 other upstream 29087 49706843 ~ 49717428 (+) True AMCG00014032
TU60537 other upstream 42987 49703078 ~ 49703528 (+) True G48455
TU60536 other upstream 44572 49701251 ~ 49701943 (+) True G48454
TU60679 other downstream 166342 49913929 ~ 49914542 (+) True G48566
TU60704 other downstream 189228 49936815 ~ 49948082 (+) True G48578
TU60712 other downstream 208605 49956192 ~ 49956729 (+) True G48583

Expression Profile