RNA id: AMCG00014032


Basic Information

Item Value
RNA id AMCG00014032
length 912
RNA type mRNA
GC content 0.70
exon number 4
gene id AMCG00014032
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49706843 ~ 49717428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCGCCCGCACAGACCCGCACCGGGACGCAGAACGCCGGGTTCTAAACGGCCCACACGCCCCGCACCGCGCAGCCCGGCGGACTTTCGCGCCGCTCAAAGTTTCCGCGCAGAGCCGCCTCTCTCCTGCGGGCGCCCAGGGACTGCAATCCGGCTGACCTCCTGTTGTTCCGGGCTGCGCTTTGTTCGGCTCTCGGAGGAAAGTTTGCCCCAGTCCGCGCTGTTGCCCCGTGCCCACGGAGCGGCTGCCCGGCCCGTCGCCCGAGCGCTGCCGGCGCAGAGGGGCAGGAGCCCGGAGAATTGCCGAGCAGCCCGCGGTCTTTGTTCCGGAGTTTTCCCAAACGATGAGGAGGGTGCCGGGTCTGTTGAGCAGTGTGTCCTGAGGCTCCCGAGAGGCTGCGATGGTGACGGCTCGGTCCCCGGTGTCACAGTGTACCGGGTCCCTGTCCCACCTGAGCAGCCCTGATCGAGAGCGCAGGCCTTAGCCGAGTGATGGACCGCTGTAAACACGTGGGCCGGCTGCGGCTGGCGCAGGACCACTCCATCCTCAACCCGCAGAAGTGGCGCTGTGTGGACTGCCTGACCACGGAGTCGGTGTGGGCCTGCCTGAAGTGCTCCCACGTGGCCTGCGGCCGCTACATGGAGGAGCATGCACTGCGGCACTTCCAGGAGTCGCGCCACCCGCTGGCCATGGCGGTACGCGAGCTGGACGTGTTCTGCTACGCCTGTGGCGACTACGTGCTGAACGACAACGCTGAGGGTGACCTGAAGCTGCTGCGGGGGGCGCTCTCCACGGTGCGTGGCCCGGGGGGGTGCGGTGACCCAGCACGACCCGGCCGCCGCAGCCTGCGCTCGCTGGCCTTGGGGGACGGCCCCTCCGGCGCCAGCAACGACCCAGGGGGGCCCAGGC

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60526 lncRNA upstream 26985 49679497 ~ 49679876 (+) True G48449
TU60422 lncRNA upstream 221902 49484489 ~ 49484959 (+) True G48372
TU60389 lncRNA upstream 250163 49453984 ~ 49456698 (+) True G48354
TU60383 lncRNA upstream 252989 49453033 ~ 49453872 (+) True G48353
TU60247 lncRNA upstream 611315 49090314 ~ 49095546 (+) True G48235
TU60545 lncRNA downstream 12790 49729671 ~ 49731800 (+) True G48460
TU60518 lncRNA downstream 29634 49746515 ~ 49747587 (+) False AMCG00014028
TU60553 lncRNA downstream 36703 49753584 ~ 49754027 (+) True G48467
TU60571 lncRNA downstream 76325 49793206 ~ 49793650 (+) True G48479
TU60552 lncRNA downstream 91267 49808148 ~ 49810966 (+) False AMCG00014038
AMCG00014026 mRNA upstream 603 49703711 ~ 49706258 (+) True AMCG00014026
AMCG00014027 mRNA upstream 9841 49695266 ~ 49697020 (+) True AMCG00014027
AMCG00014019 mRNA upstream 18204 49686808 ~ 49688657 (+) True AMCG00014019
AMCG00014014 mRNA upstream 24441 49680521 ~ 49682420 (+) True AMCG00014014
AMCG00014018 mRNA upstream 33110 49653648 ~ 49673751 (+) True AMCG00014018
AMCG00014029 mRNA downstream 633 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014030 mRNA downstream 19533 49736414 ~ 49738159 (+) True AMCG00014030
AMCG00014028 mRNA downstream 22431 49739312 ~ 49749169 (+) True AMCG00014028
AMCG00014037 mRNA downstream 53712 49770593 ~ 49771894 (+) True AMCG00014037
AMCG00014031 mRNA downstream 55280 49772161 ~ 49772784 (+) True AMCG00014031
TU60537 other upstream 3333 49703078 ~ 49703528 (+) True G48455
TU60536 other upstream 4918 49701251 ~ 49701943 (+) True G48454
TU60535 other upstream 7239 49698620 ~ 49699622 (+) True G48453
TU60533 other upstream 14500 49689672 ~ 49692361 (+) True G48451
TU60500 other upstream 89621 49613701 ~ 49617240 (+) True AMCG00014021
TU60541 other downstream 6145 49723026 ~ 49723876 (+) True G48457
TU60549 other downstream 24971 49741852 ~ 49742514 (+) True G48464
TU60679 other downstream 197048 49913929 ~ 49914542 (+) True G48566
TU60704 other downstream 219934 49936815 ~ 49948082 (+) True G48578
TU60712 other downstream 239311 49956192 ~ 49956729 (+) True G48583

Expression Profile