RNA id: TU60552


Basic Information

Item Value
RNA id TU60552
length 2761
lncRNA type sense_over
GC content 0.46
exon number 2
gene id AMCG00014038
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49808148 ~ 49813985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttactgtcttttttgtctttattcaaTATACTTTTCAGTGCACATTAATTAAGATACAGCATTCCTGTCCATGTTTCACTGGTCTGGCTTTGCTTGAGTACAGTTCCATACGGAGAGTAGAAACAGCTATGAAATGAGGCTAGCTCCAAACTAGAACaagtacagtgtatatatatttatatatgtatattataatacagtTATCCGATTTccataaaacagaaacatcaagagaaattaaattttaaaaaataaaacaaaattaaataaaaaatctcgcAATCCCTCAATGGGAATTTCCAGCTTAACAACTTGaaacatttctataaatattcagtatttcattatatatatatatatatatatatatatatataaagtatatcaAACAAGCACTGGTGCTAAAGTTACGGTACAGTAAGGAACAAGTTATTCTAGTGTTTGCCGAGGGTGAACAGAAGGGAGTGTCAAGGTGGACGCCTGGCAGGGTTGTGGACAGCACTGAGAGACGCTGCAGGTCCCACAGATCAGAGCGGGCCGGCTCGGCCACAGCGTCTCACCTCCAGCAGCAGAGACCAAAACAACACAACCTTAAGACGGTTTGCTTTCTTCTggaggaaataaatataatctacagCTACAGACGGTGTGGCCTTGGTGCTCTGCTCCTCAAAGCTCATCCTCTGTCCTGAAGGGGGGCGGGACAGGGAGGCTCCAGGGACAACACACccctgtgtgtcactgtgacaGAGGGCTAGTGTTGAAAGCACGAAGGAAGCCACAGGGAGGAATCTATGGATGGGCTCGGCCACTCAGACCCAGCGCCTGTTATTGAGTTAGGGTGAGGCTTCACTACATTAACTGAATCTAGgaatgttttaatctttttaagaGTTATTGCACAAATGGCTCTCTGTGTTTCCAGGAATGGTTTTCTAATGAAAACACATTCATCACTTTAGATCTGACCTTCTTATCACTGCCCTTAATGTGACTTTGGATATTTATAATACTGGGAAACCATTAAGTGTATTATCCTTGTAATTAGACTGATTTGTATCAagattttggaaaaataaacgCAATAATCTAAAACAATTATTGAAAGAGTGGCGATTAGTGCCAGAGTGCAGATTATGCCACCTGGGGAACAGTAAACAGGGAGCGGTCATTGCACGTGGAGCCTCTGCTCAGAACTGCAGCCGCCTGTCCCTTACAGAGCGCTGAGATGCCCCCAGTGGCACTAAAGTGGCAATACTTGGATCTGACAACATGTTGACATTCACTGAAAGGGGATGAGCAGTAAGTCACCGCACTGCACCCAGGCTGATGGGAATTCACACTCAGCACAGACCCTGCGCTGCAGCGCTCTGCCCGTCCAGGACCTGCCAGGGCTCTCGCCTCGAAGGGTCCAACACAAACCTACACCACAACAGAATACCAAGGTAcccaaggaaaaaaacaaacaaacatctgtgaaataaatactCGTACTTGCCAACACTTCACTCTCGTGGAAATAAAGACAATCCTCGGACTGAAGCAGCACATGGCACATCGTTATAAAGCACTTGTACCTACAGAAGCCCACAGTGGCGTTGTCAAGTACAAATGATAGGGATGCGCTTACCTAGGCAAGTGCACAACCAGCACACACTGGGAGCAGAAGACTGGGCCCAGACCGGACCAATCAGGGCATCAGATGACCAccctccctctcctgctctcGCCCCGGCCGTGTGCCCACTCTTCTGCCCCAAGCCTCCCTTCCGATACATTCAAAGAGGTGTTTGACATTGTGGTGCGTGACACCCTGAGCTCCCAGCCCCCCTGTGAACACCCGAAGAGTCCCAGCGATATAAGACTTGCACAGCTTAAAGAATTTCTCACAGAAGCACAGCGACCGCGGGACAGACGGACGGACGAGACGAGCACACGAGGCCAGTATTTACAGCTTACTCGAACAGCTTAGTACCTACGAGAACATGCTtctgtacaaaaaataattaacatcatTAGAAAATATATCTAGGTAAAGTAAAGTCAAGTGCatgcacgagagagagagagagagagagggggactgTAAACATTAACCACCTGACAAAGCAGTCTCTGCAGAACAACACAGTTAATACAGGTGTCTGGGGATGAGAGCAGAACTAGAGGAGGAATAAAACTCTCGGGCAGCACTGGTAACAAATATCCCCGCAGTGGAATATGAAGCAGAAACCCTGACCGGAGCAACTCGTGAGGAGCGCCGAGCGGAGGATGGGAAGGACACGGACACACGCATGGCATTTTATACACTTCCCACTCCGGGAAAAAGTTACAGATTAAATCCATTTTGGATTACAATAGTCAATAAATCATCatgtagttaaataaataaaaaaaaaaatgcagaagagTATTGCATAACAGAAACGGTGTACATGAGGACTGTACAAGCCTGGCTTCCCCAGGCAGCAACGTTAGCGATGAAGCAGCAGGCACGCCTCGAGCCACAGCCTGTCGAGGCAACTAAAACTTCCACATGGCATGTCACAAAGCAAACCGCAACACCGGGAATATCTGCTACCAGCTGACGAAGTGAGGCGGGACAGAGGAACAGCGAACTCCTTCAGGAAGGAGGTGATGCGTCTTGGACCCGCAGAGACCAGTCCGGCACTGGAGACACTTCCCACCGTTTAGAAACAGATCAGCCTCCTAGAAGACTCTGACCTGTCGAGTTTGGCAAATGGAAAGTCTCAGAATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60571 lncRNA upstream 14498 49793206 ~ 49793650 (+) True G48479
TU60553 lncRNA upstream 54121 49753584 ~ 49754027 (+) True G48467
TU60518 lncRNA upstream 60561 49746515 ~ 49747587 (+) False AMCG00014028
TU60545 lncRNA upstream 76348 49729671 ~ 49731800 (+) True G48460
TU60526 lncRNA upstream 128272 49679497 ~ 49679876 (+) True G48449
TU60664 lncRNA downstream 46514 49857480 ~ 49857687 (+) True G48552
TU60672 lncRNA downstream 60140 49871106 ~ 49873377 (+) True G48560
AMCG00014031 mRNA upstream 35364 49772161 ~ 49772784 (+) True AMCG00014031
AMCG00014037 mRNA upstream 36254 49770593 ~ 49771894 (+) True AMCG00014037
AMCG00014028 mRNA upstream 58979 49739312 ~ 49749169 (+) True AMCG00014028
AMCG00014030 mRNA upstream 69989 49736414 ~ 49738159 (+) True AMCG00014030
AMCG00014029 mRNA upstream 79156 49717514 ~ 49728992 (+) True AMCG00014029
AMCG00014040 mRNA downstream 26459 49837425 ~ 49842315 (+) True AMCG00014040
AMCG00014050 mRNA downstream 99592 49910558 ~ 49916242 (+) True AMCG00014050
AMCG00014039 mRNA downstream 107661 49918627 ~ 49925703 (+) True AMCG00014039
AMCG00014049 mRNA downstream 116260 49927226 ~ 49929020 (+) True AMCG00014049
TU60549 other upstream 65634 49741852 ~ 49742514 (+) True G48464
TU60541 other upstream 84272 49723026 ~ 49723876 (+) True G48457
TU60542 other upstream 90720 49706843 ~ 49717428 (+) True AMCG00014032
TU60537 other upstream 104620 49703078 ~ 49703528 (+) True G48455
TU60536 other upstream 106205 49701251 ~ 49701943 (+) True G48454
TU60679 other downstream 102963 49913929 ~ 49914542 (+) True G48566
TU60704 other downstream 125849 49936815 ~ 49948082 (+) True G48578
TU60712 other downstream 145226 49956192 ~ 49956729 (+) True G48583

Expression Profile