RNA id: AMCG00014039


Basic Information

Item Value
RNA id AMCG00014039
length 1833
RNA type mRNA
GC content 0.66
exon number 12
gene id AMCG00014039
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49918627 ~ 49925703 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCCCAGTCCAGTCCGCTCCCCAGCTCACACGTCTCGCCCCCCCAGGATACCAGGATGTCACGCGGCAAGGTGATCAGCTGTCTGCTGGTGGTGAGCGTGGTGGCCATGCTGGCCGAGCAGACGGAGGGCTTCATCAGCTTCATCAGTCCCGGAGACATGAGGAGGATGATGGAGCAGGAGAAAGGGAGAGCTGGGAAGAAGTCGCTGGAAGTGGAGCAGAGGTCCGAAGAGAGGGAGTCGGGGGAGCTGGCCAGCCCAGACTGGTACAGACAGAAGGACACGGCCAAGgGAGCTCCCCTGGAGATCGGGGTGCGGTTGAGTCCCCAGCAGCTGGACAGGCTGGCCCCGGTGCTGGGGGAGATTCTGCACGAGATGCTGGCAGAGGGGAACAAAGTTTTACAGACACTGATCAATAACAAGGtccagggagggagagggggccgTGTGCGCGCTTGCTCTCGATGGCCCTCCCCAACATGGCGCCGCGACCCGCCCGGCCGAGTCCAGGCGCACTTCCGGCAGCACTCCAGCATGGCGTCGCTGTCGGACGAGGAGCTGCGGCGCGGCCTGCGGGCGCTGGGCTTCTGCCCGGGACCCATCTCTGACAGCACCCGCAAGCTGTACCTCAACAAGCTGCGCAAGCTGCGCGCCACCGACCGCAACCGGGTGCAGCTGCTGCGGAGCCAGGGCCCGGGCAACAAGCACCCTCCCCAGGCCTCCCTGCAGCGCCACCGGCACGACAGCCACCGACAGCGGACGAGCAGCGCCAGCCCCCGCCACCGGACCGCCAGCTTTCAACGGGACTCCGAGGAGTCTGACGAGGAGGACGACGACGAGTACGGGTACCGGGAGGAGACCCGGTACCGGCAGCTGGCGGACAGCGGCAGCTCGCTGAAGAAGGGGGACGCTCAGCGGCGCTGCGACAGCACGGCGCGGTGGAACCGGTTCGTGGAGCGGCAGCTGTCCCGGGCGCTGCTGGCCTGCACCGTAGCGCTGTCCGTCGTGCTGCTCTGGCTGGTGTACGTGAAGACCGTGGGCCTGGGCCAGCCCGCCGAGCCCGGCAGCAACATCCTGTTGCTGCCGATGGACTGCAAAGGGAAGAGCGACACAtaCTGCAGGGCCGAGGAGAAGCGGATGGAGCTGCAGCTGCTGTCAGAGCTCTACAGCTTCCTGGCCAAGGTGGCAGgtGATTTTGAATGTGGGAACCCATCACAGTTCAAGAGCAGATGTGTCTCCATTCCAGAGGTTGAGAGTTACTTGGCAACTATAAACAAAGGTTACCCCAGCAGGCTGGCAGAGGCCCTGCAGTGGATTCACCAGAGCGACACAGACCTGGGCATCTGGCTGGTGGGCAAGGACCCCCAGAGGGCACTGGTGTCGTTGCAGGGGCTGAGCTGCGTGCAGTCAACCAGTCCAGCCCTCAGTCTGGGTTGCCGCCTGCGACTGGCCGTGCATGCCGCCATCCTCAAGAGCCTCATCTTCATCCTGGCGCTGGCCGTGATGTGGGGAGTCCTGGTGCTGCTCCGGTACCGCTGGCGGCGTctgcaggaggaggagcaggcCATGTACGAGCTGGTGCGCCGTATCATCGCGGCGGTCCGGGAGCACTATAAGGACTGGGACCAGGGGCTGGAGCCCATCCCCTACCTGCCCATCCCTCACGTCCGGGACGCCCTGCTGCCGCCGCAGAACAGGTCCGCAGCCCTCTGTCCCACAGGGTGGAGCTCCCTTCCAGAGTCGCGGATTCGCACCGAGAGCCACCGCGTGGCCGGGGAGGACTTCCTGGTGTGGCGATGGACGCAGCCGGCCGAGCTGTCTGACTCCAGCTAA

Function

GO: NA

KEGG:

id description
K24080 LEMD2; LEM domain-contaning protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60672 lncRNA upstream 45250 49871106 ~ 49873377 (+) True G48560
TU60664 lncRNA upstream 60940 49857480 ~ 49857687 (+) True G48552
TU60552 lncRNA upstream 107661 49808148 ~ 49810966 (+) False AMCG00014038
TU60571 lncRNA upstream 124977 49793206 ~ 49793650 (+) True G48479
TU60553 lncRNA upstream 164600 49753584 ~ 49754027 (+) True G48467
AMCG00014050 mRNA upstream 2385 49910558 ~ 49916242 (+) True AMCG00014050
AMCG00014040 mRNA upstream 76312 49837425 ~ 49842315 (+) True AMCG00014040
AMCG00014038 mRNA upstream 104642 49808571 ~ 49813985 (+) True AMCG00014038
AMCG00014031 mRNA upstream 145843 49772161 ~ 49772784 (+) True AMCG00014031
AMCG00014037 mRNA upstream 146733 49770593 ~ 49771894 (+) True AMCG00014037
AMCG00014049 mRNA downstream 1523 49927226 ~ 49929020 (+) True AMCG00014049
TU60679 other upstream 4085 49913929 ~ 49914542 (+) True G48566
TU60549 other upstream 176113 49741852 ~ 49742514 (+) True G48464
TU60541 other upstream 194751 49723026 ~ 49723876 (+) True G48457
TU60542 other upstream 201199 49706843 ~ 49717428 (+) True AMCG00014032
TU60537 other upstream 215099 49703078 ~ 49703528 (+) True G48455
TU60704 other downstream 11112 49936815 ~ 49948082 (+) True G48578
TU60712 other downstream 30489 49956192 ~ 49956729 (+) True G48583

Expression Profile