RNA id: AMCG00014046


Basic Information

Item Value
RNA id AMCG00014046
length 1580
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00014046
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49783272 ~ 49788746 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAAGTCCTGGGAACGCCTACCTGGTCCATCGATGAAGCAAGTGGACCTAAAGATCATCATCCTTGGAGCCCTGGGTGTGGGAAAGACATCATTGTTGCACCAGTATATCCACCAGCGATACTACGATGATTACCGCACTACTCTGGGAGCCAGTGTGATGTCCAAGAACATCACAGTAGATAACCAAGCTGTCAAGATGCAGATCTGGGACACGGGGGGCCAGGAGAGATTCCGCTCGGTTGTGTCTACCTTCTACAAGGGGGTCGACGGCTGCATCCTCGCCTTTGATGTGACTGACAGGGATTCCTTTCTGGAGCTGGAGGGCTGGAGGCAGGATATTCTGGACAAGACCCACCCACCGGACCCCAGCCTGCCCTTCGTGCTCCTGGGGAACAAGATCGACATGCAGGATAGACAGGTGAGCAGCGGAAACGCGGCGCAGTGGAGTGAGGAAAGAAACATTCCCTACCTGGAGGTCAGCGCCAAGGACAACATCAATGTGGAGCAGGCCTTCCAGACCCTGGCAGGACATGCACTCATTAGGCACAAAGAGGGACTTATGAGCTACATGACAGACTCGATCAAACTCAAACCCGAGAAGACATCAAAGAAAAGGAGGAAATGCTGTTCATAGAATATATACACAACAATTTTCATCCCCCACCCACCGCGGCTCTCCGTCTGTGGGACCCTGCAGATGTGACTGCTGTCAAGTGACTTCTTTACTAGTGCAGCAGCTCTGATGAGGATCCAAGGTCAGGGTACAGTGTGAAGCACAGACAGGTTTGATCATTCAGTAGAAATTAATAAGTTTCACTGGACTGTTACTGAAGATCAAAGAATGGACACTACATCACATCACTGAAGCACATCTTCTTGTTGAAGAATGACAGTGATCCCCCCAGTTCCAGAGTGGAGGATGTCAGTACTGTAACTCCCAGTTTGTAAGacctgtaaagaaaaaaagattacattAGACTCAGTTTCCAATTTTTTCATTACTTGCTAGAAGACACAGAAAGAACATTTTACCAAGTAATCCAGTATAAGCATTTCACGGTTTCCACTGCTGCTAACCAGTTTCACCCATGGTTATGTTAGcatcattttgaaaacagacaCATCTATCGCCCAGTACAGAGACTATTGTTTCCAATACAACATATTTGCAATACTGAAGAGGTTCTTAGAATCtgtgtaaagaaacaaaacattttgatataAACACTTTAATTATAAAGGAAAAATGTTGCAAAGTATGAACTCAGATTGGTATTGGTTTCAAAGTCCTTATAATACTAACAAACTGATGTCTATGGTTTGAAGCAGGCAGAGAAGATAAGAGACATTTTACTCGGTGGGGTATTTACATGTTGCGAGACCTAATCTCAAATAAATTGACTGGAAGTGGCTTGGTCATCTGTCCTATACACCCAACTCTTTTTGTCTCCTAGTGTTGAGATATATTGTGAtctattttatgaataaatattgtaattgttctccgtgtttttctgctgtatttggtttctttgttgAGCTTTCAGTCACATCTCACCACAGTCTCTATTGGTC

Function

GO:

id name namespace
GO:0005770 late endosome cellular_component

KEGG:

id description
K07898 RAB7B; Ras-related protein Rab-7B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60616 lncRNA downstream 33990 49748589 ~ 49749282 (-) True G48517
TU60612 lncRNA downstream 35721 49744946 ~ 49747551 (-) False G48516
TU60607 lncRNA downstream 49100 49733909 ~ 49734172 (-) True G48512
TU60604 lncRNA downstream 56265 49726288 ~ 49727007 (-) True G48509
TU60603 lncRNA downstream 57023 49725735 ~ 49726249 (-) True G48508
AMCG00014036 mRNA downstream 26031 49750468 ~ 49757241 (-) True AMCG00014036
AMCG00014033 mRNA downstream 59035 49723075 ~ 49724237 (-) True AMCG00014033
AMCG00014035 mRNA downstream 79899 49697861 ~ 49703373 (-) True AMCG00014035
AMCG00014034 mRNA downstream 89108 49689679 ~ 49694164 (-) True AMCG00014034
AMCG00014024 mRNA downstream 102910 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014048 mRNA upstream 2597 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014047 mRNA upstream 8100 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014045 mRNA upstream 25303 49814049 ~ 49818276 (-) True AMCG00014045
AMCG00014042 mRNA upstream 31734 49820480 ~ 49831371 (-) True AMCG00014042
AMCG00014043 mRNA upstream 75576 49864322 ~ 49865656 (-) True AMCG00014043
TU60614 other downstream 35721 49744946 ~ 49747551 (-) True G48516
TU60605 other downstream 54217 49728504 ~ 49729055 (-) True G48510
TU60601 other downstream 61746 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 284642 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 298505 49484500 ~ 49484767 (-) True G48373
TU60684 other upstream 75578 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 82247 49870993 ~ 49873375 (-) False G48570
TU60686 other upstream 82247 49870993 ~ 49918397 (-) True G48570

Expression Profile