RNA id: TU47736


Basic Information

Item Value
RNA id TU47736
length 313
lncRNA type sense_over
GC content 0.27
exon number 2
gene id G38268
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 523730 ~ 543653 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCTGATGCTTCCTTCTCAGGCCACAGTAGTGTTTATTGGGATTGtcttaaaaaacacataacaaGTTTCgtatttcaaatgtgtatttacaaaagTTTCTTACAGCAAAACATTATACTTTGTTaaattgttgttgatttttgtctTCAATACTTTACACAGGTAAAAGTGACTGAaaaattttacttttaaaaataatataatgcagtCCAACCTCCTTACGCCACTAGATACATTGAAGGTTCTAATACAaaggagtattttttttttttttctttcattcattttttttttttttttttttttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47834 lncRNA downstream 304386 848039 ~ 853017 (+) True G38356
TU47838 lncRNA downstream 322484 866137 ~ 866383 (+) True G38359
TU47842 lncRNA downstream 349658 893311 ~ 893586 (+) True G38363
TU47843 lncRNA downstream 376212 919865 ~ 920124 (+) True G38364
TU47858 lncRNA downstream 544216 1087869 ~ 1088192 (+) True G38379
AMCG00012627 mRNA upstream 16067 477795 ~ 507663 (+) True AMCG00012627
AMCG00012622 mRNA upstream 399473 21980 ~ 124257 (+) True AMCG00012622
AMCG00012633 mRNA downstream 95340 638993 ~ 776748 (+) True AMCG00012633
AMCG00012639 mRNA downstream 235255 778908 ~ 839266 (+) True AMCG00012639
AMCG00012641 mRNA downstream 851186 1394839 ~ 1581388 (+) True AMCG00012641
AMCG00012645 mRNA downstream 1217604 1761257 ~ 1769703 (+) True AMCG00012645
AMCG00012644 mRNA downstream 1234954 1778607 ~ 1807616 (+) True AMCG00012644
TU47823 other downstream 276871 820524 ~ 824708 (+) False AMCG00012639
TU47822 other downstream 278498 822151 ~ 824708 (+) False AMCG00012639
TU48550 other downstream 3826660 4370313 ~ 4373574 (+) True G38954
TU48986 other downstream 5008764 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 5264193 5807846 ~ 5823320 (+) False AMCG00012718

Expression Profile