RNA id: TU47775


Basic Information

Item Value
RNA id TU47775
length 211
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G38305
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 596608 ~ 596818 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTTTGTGACAGCGATCACCTTCTCCAGGTCCATGTGCACGCCGTGGGCATCGATGACGTAACCCAGGAACCCCAAGCACTGTCAGTGGAACTCACACTTCTCCACCTTGATGTACAGTACATTGCGCAGCAGACACTGGAGAACCAGTCACACCTGGGAAACGTGctcagagagggaggcagagtaAATCAGAATGTCGTCAATGTAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47758 lncRNA downstream 57017 523747 ~ 539591 (-) False AMCG00012628
TU47832 lncRNA upstream 240293 837111 ~ 840487 (-) True G38355
TU47918 lncRNA upstream 982137 1578955 ~ 1583433 (-) False AMCG00012646
TU47965 lncRNA upstream 1287811 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 1303942 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 1398029 1994847 ~ 1995063 (-) True G38475
AMCG00012631 mRNA downstream 5955 589227 ~ 590653 (-) True AMCG00012631
AMCG00012632 mRNA downstream 22236 557829 ~ 574372 (-) True AMCG00012632
AMCG00012628 mRNA downstream 57802 514222 ~ 538806 (-) False AMCG00012628
AMCG00012624 mRNA downstream 146032 420233 ~ 450576 (-) True AMCG00012624
AMCG00012623 mRNA downstream 298483 281594 ~ 298125 (-) True AMCG00012623
AMCG00012630 mRNA upstream 3037 599855 ~ 613207 (-) True AMCG00012630
AMCG00012634 mRNA upstream 148517 745335 ~ 751549 (-) True AMCG00012634
AMCG00012637 mRNA upstream 170187 767005 ~ 792382 (-) True AMCG00012637
AMCG00012638 mRNA upstream 203241 800059 ~ 816537 (-) True AMCG00012638
AMCG00012636 mRNA upstream 269313 866131 ~ 893617 (-) True AMCG00012636
TU47757 other downstream 57017 523747 ~ 539591 (-) True AMCG00012628
TU47949 other upstream 1180036 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 1587067 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 5858903 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 8515623 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 11643578 12240396 ~ 12253443 (-) True AMCG00012888

Expression Profile