RNA id: TU47832


Basic Information

Item Value
RNA id TU47832
length 676
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G38355
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 837111 ~ 840487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCATCTCACATTGCACGTATTGCATTGGAGATTTAGGACGTATCAGTTTGCATaaaagactctctctctctctctctctctctctctctctctctctctctcttaaaagCAGAATCACGTGTTTGTATCAAATCTTCAAGCGGCTTGCACAGACTAAAACAAGAGCTTTAACTGTTTCGGCGTTCGTGGTAGGAACCGGACCTGGGAAGTTGACGTCAACAGATTAAAGGACGTGAAAAAGTGCATGACTGGGGTGTACCGAACTCCTGACAAATAATTAGCTGGAGGACCTCAATAGGCGCTGATGccttagtgtttttttgttctttttttttttgtccttctttTTGTGACCTCTGAGTGGGTTTTGGGTTTAGCATTCATATTATGCATGACACATTGACCAGCAACATGAATATATTCGCAAATCCGTAGTTGGTGCCGCACACGGGATCGCACACCACAAAACTGCGCTCAGCTCCAGCACCAGTAGTAATATAGGACTACATCAATGTCAAGAAATTTCAGAATGGAAACTTCAAACAAGGAGAATGGTATCATCCCATGGAAGATGGAACCCCCACCTAAGGAGAGATGCTTAGCAGAGACTGAGCTCTCTTTAAATGGCAAACACTCCTGCTTCTCCAACCTTAAGGTATTGTTGTATTTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47775 lncRNA downstream 240293 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 297520 523747 ~ 539591 (-) False AMCG00012628
TU47918 lncRNA upstream 738468 1578955 ~ 1583433 (-) False AMCG00012646
TU47965 lncRNA upstream 1044142 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 1060273 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 1154360 1994847 ~ 1995063 (-) True G38475
TU47972 lncRNA upstream 1191350 2031837 ~ 2032211 (-) True G38478
AMCG00012638 mRNA downstream 20574 800059 ~ 816537 (-) True AMCG00012638
AMCG00012637 mRNA downstream 44729 767005 ~ 792382 (-) True AMCG00012637
AMCG00012634 mRNA downstream 85562 745335 ~ 751549 (-) True AMCG00012634
AMCG00012630 mRNA downstream 223904 599855 ~ 613207 (-) True AMCG00012630
AMCG00012631 mRNA downstream 246458 589227 ~ 590653 (-) True AMCG00012631
AMCG00012636 mRNA upstream 25644 866131 ~ 893617 (-) True AMCG00012636
AMCG00012635 mRNA upstream 73948 914435 ~ 920125 (-) True AMCG00012635
AMCG00012640 mRNA upstream 172995 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012643 mRNA upstream 198282 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012642 mRNA upstream 519836 1360323 ~ 1582270 (-) True AMCG00012642
TU47757 other downstream 297520 523747 ~ 539591 (-) True AMCG00012628
TU47949 other upstream 936367 1776854 ~ 1777221 (-) True G38458
TU47984 other upstream 1343398 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 5615234 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 8271954 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 11399909 12240396 ~ 12253443 (-) True AMCG00012888

Expression Profile