RNA id: TU47949


Basic Information

Item Value
RNA id TU47949
length 368
RNA type TUCP
GC content 0.56
exon number 1
gene id G38458
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1776854 ~ 1777221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggggatcacgatcaacgggaccaacacgggcacccggagctgggaggaggccTTATCCAAGGTCCAAAGAAAGATCCACGGCtagagcacaaggaccttgacgatggccggtaaggtgctggtcgtaaaggccatcctcttcccgatactcCTCTACGTAGGaatgatcttccccccagacaaggtcgtcgcaaaactagtgaccagaattatatttcagtttgtctgggggagcaaaatggagaggctgaagagagtgcaaatggtgaagggtaccctggatggaggcaggggggtcccggacgttgtgcggctgataaaggcgcaggggctggcctacgtggtcaagaacatccaggctgcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47918 lncRNA downstream 193421 1578955 ~ 1583433 (-) False AMCG00012646
TU47832 lncRNA downstream 936367 837111 ~ 840487 (-) True G38355
TU47775 lncRNA downstream 1180036 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 1237263 523747 ~ 539591 (-) False AMCG00012628
TU47965 lncRNA upstream 107408 1884629 ~ 1887591 (-) True G38472
TU47966 lncRNA upstream 123539 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 217626 1994847 ~ 1995063 (-) True G38475
TU47972 lncRNA upstream 254616 2031837 ~ 2032211 (-) True G38478
TU47995 lncRNA upstream 517739 2294960 ~ 2295164 (-) True G38501
AMCG00012642 mRNA downstream 194584 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012643 mRNA downstream 430936 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012640 mRNA downstream 739501 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012635 mRNA downstream 856729 914435 ~ 920125 (-) True AMCG00012635
AMCG00012636 mRNA downstream 883237 866131 ~ 893617 (-) True AMCG00012636
AMCG00012649 mRNA upstream 538781 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012648 mRNA upstream 542306 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012655 mRNA upstream 644387 2421608 ~ 2431840 (-) True AMCG00012655
AMCG00012656 mRNA upstream 659629 2436850 ~ 2468497 (-) True AMCG00012656
AMCG00012663 mRNA upstream 1100547 2877768 ~ 2910246 (-) True AMCG00012663
TU47757 other downstream 1237263 523747 ~ 539591 (-) True AMCG00012628
TU47984 other upstream 406664 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 4678500 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 7335220 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 10463175 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 11337672 13114893 ~ 13115487 (-) True G40778

Expression Profile