RNA id: TU47965


Basic Information

Item Value
RNA id TU47965
length 273
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G38472
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1884629 ~ 1887591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agacaatGAAACTGAGGATGAGTATACTCGATGAAAAAGAGGCAAGTATATTGTATTATcagtattataatgtaatgtatactgcagattgaaaacaatgttatttgcaTTGAGACATGTATCACTTTTTTTGCAGACATGTTCACTTCTGGAGAAAATCAAGAGTGCTGTGAAGCTGAAGATGACTTATGCAAATACGTCATTACTTCTGGATGTGTTAGCTCCTGagGTTATAATCAAAATACTGCAGAAACATGAGGTATTCTCCAGATA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47918 lncRNA downstream 301196 1578955 ~ 1583433 (-) False AMCG00012646
TU47832 lncRNA downstream 1044142 837111 ~ 840487 (-) True G38355
TU47775 lncRNA downstream 1287811 596608 ~ 596818 (-) True G38305
TU47758 lncRNA downstream 1345038 523747 ~ 539591 (-) False AMCG00012628
TU47966 lncRNA upstream 13169 1900760 ~ 1901924 (-) True G38473
TU47969 lncRNA upstream 107256 1994847 ~ 1995063 (-) True G38475
TU47972 lncRNA upstream 144246 2031837 ~ 2032211 (-) True G38478
TU47995 lncRNA upstream 407369 2294960 ~ 2295164 (-) True G38501
TU48044 lncRNA upstream 611332 2498923 ~ 2500343 (-) True G38533
AMCG00012646 mRNA downstream 67429 1583313 ~ 1817200 (-) True AMCG00012646
AMCG00012642 mRNA downstream 302359 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012643 mRNA downstream 538711 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012640 mRNA downstream 847276 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012635 mRNA downstream 964504 914435 ~ 920125 (-) True AMCG00012635
AMCG00012649 mRNA upstream 428411 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012648 mRNA upstream 431936 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012655 mRNA upstream 534017 2421608 ~ 2431840 (-) True AMCG00012655
AMCG00012656 mRNA upstream 549259 2436850 ~ 2468497 (-) True AMCG00012656
AMCG00012663 mRNA upstream 990177 2877768 ~ 2910246 (-) True AMCG00012663
TU47949 other downstream 107408 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 1345038 523747 ~ 539591 (-) True AMCG00012628
TU47984 other upstream 296294 2183885 ~ 2184163 (-) True G38490
TU49217 other upstream 4568130 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 7224850 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 10352805 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 11227302 13114893 ~ 13115487 (-) True G40778

Expression Profile