RNA id: TU47984



Basic Information


Item Value
RNA id TU47984
length 279
RNA type TUCP
GC content 0.52
exon number 1
gene id G38490
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2183885 ~ 2184163 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaattgtgatggctagacgactaggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacatggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU47972 lncRNA downstream 151674 2031837 ~ 2032211 (-) True G38478
TU47969 lncRNA downstream 188822 1994847 ~ 1995063 (-) True G38475
TU47966 lncRNA downstream 281961 1900760 ~ 1901924 (-) True G38473
TU47965 lncRNA downstream 296294 1884629 ~ 1887591 (-) True G38472
TU47918 lncRNA downstream 600452 1578955 ~ 1583433 (-) False AMCG00012646
TU47995 lncRNA upstream 110797 2294960 ~ 2295164 (-) True G38501
TU48044 lncRNA upstream 314760 2498923 ~ 2500343 (-) True G38533
TU48051 lncRNA upstream 380142 2564305 ~ 2564702 (-) True G38539
TU48062 lncRNA upstream 421335 2605498 ~ 2605768 (-) True G38549
TU48065 lncRNA upstream 438826 2622989 ~ 2623189 (-) True G38552
AMCG00012646 mRNA downstream 366685 1583313 ~ 1817200 (-) True AMCG00012646
AMCG00012642 mRNA downstream 601615 1360323 ~ 1582270 (-) True AMCG00012642
AMCG00012643 mRNA downstream 837967 1038769 ~ 1345918 (-) True AMCG00012643
AMCG00012640 mRNA downstream 1146532 1013482 ~ 1037353 (-) True AMCG00012640
AMCG00012635 mRNA downstream 1263760 914435 ~ 920125 (-) True AMCG00012635
AMCG00012649 mRNA upstream 131839 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012648 mRNA upstream 135364 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012655 mRNA upstream 237445 2421608 ~ 2431840 (-) True AMCG00012655
AMCG00012656 mRNA upstream 252687 2436850 ~ 2468497 (-) True AMCG00012656
AMCG00012663 mRNA upstream 693605 2877768 ~ 2910246 (-) True AMCG00012663
TU47949 other downstream 406664 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 1644294 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 4271558 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 6928278 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 10056233 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 10930730 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 15696062 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile