RNA id: TU48044


Basic Information

Item Value
RNA id TU48044
length 1386
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G38533
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2498923 ~ 2500343 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCAGAGTCTCGTTCGATGGCTTTCTTCACTTTGCCGTAGGTCCCTCTGCCCAGCGTCTCCAGTAGCTCGTAGCGGTGTTTGAGGTTGTGCTTGTGATGGTGCTTCTTCACGCTCGGTCTTCTCCTGCTCTCCCCGGCTGTCGAGCCACAGCCGCCGGCCACCGGGCTAGCCGGAAGCGGGCAGGGCAGGCTGTCTCTCCGGGTCATCGCCGCCCCGTGCAGGGCTAGTTCCGCACCAGAACGGGGGACCCGGGGCGGCGAGGGCGAGATGCGAGCAgtatccataaaaaaaaaaatgcgcacttacttttttcctttctttaacaGTTCTgtgatctatttttaaatatatttataaacaaatgcatatatcgACGCTAAAGGCAAatacctataaataataataataataataataataataataataataataaataggttTTAAGATTTGAGCTGCATCGCCTCTTGTATTCCTGCTAgctagttttttttaatcactacAGCTGATTATCTCTCCCGGTTTACATAAAGaattaagtaaagaaaaaagtacccatacagtgagagaaagggCGATTGTATGGATGAAAACAGATGTCATTCGTTaatgacatttcaaaataaagtgcacagtATTCTGGAGCAGgagggggattttttttttaagttaatagGTTTGCTAAGTtcagtaatattatatatatatatataatataaggtcgAATTAGGTTTCCTTCCTCACTTTCGCTCTCAGAGCGAACACGGTGTCTTCACGTAGCCTGTCCAATCCAAGCACATACAGACCTGAATTTACACCACATattgaatattaatttatataaaataatataaagcaaAACTACATTAGACTCGCCCGaggattttaattaacaaactgTAGTCTTTTTTCCGTTTCCGTTTATCGTGTTGAGACATGGTCGGCCGTTTTCGGCTGCACACCGTTATGCACTGCGAGTGTATACAGCTGTACTGTAGGTAGGTccaaaaaaatgcagtttagaTTAAGATATAAAAGtctgagaaataaatacttaggagaaaaaaataaaaataaatcaacgcCAGCGTCATCGGCTCCCGAAAAGGCAGTGACCAACCTGGTGCTCCTGGGGGAAACGGAGCTCATTTTGCCCCCATGCCCGGCACTCGGAATCTGGACCTGTAATCCGTGGCGACGGTGCGGTCAGAGGTGTGCGGTGTACAGTTACAGGCTGCTGAAGCTTTCTCTGAACGGCCATGCTCATTATATCCCCTTTCGCTCtcgccctctccctccctctctgtctttcgCTCATCTGGAAGACTGTGAATAAGGAATGCGAACCGTATGCAACCGGAGGTGGAGTTACACTTCACAGAGC

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0007599 hemostasis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47995 lncRNA downstream 203759 2294960 ~ 2295164 (-) True G38501
TU47972 lncRNA downstream 466712 2031837 ~ 2032211 (-) True G38478
TU47969 lncRNA downstream 503860 1994847 ~ 1995063 (-) True G38475
TU47966 lncRNA downstream 596999 1900760 ~ 1901924 (-) True G38473
TU47965 lncRNA downstream 611332 1884629 ~ 1887591 (-) True G38472
TU48051 lncRNA upstream 63962 2564305 ~ 2564702 (-) True G38539
TU48062 lncRNA upstream 105155 2605498 ~ 2605768 (-) True G38549
TU48065 lncRNA upstream 122646 2622989 ~ 2623189 (-) True G38552
TU48086 lncRNA upstream 225686 2726029 ~ 2775202 (-) True G38573
TU48095 lncRNA upstream 278507 2778850 ~ 2791524 (-) True G38581
AMCG00012656 mRNA downstream 30426 2436850 ~ 2468497 (-) True AMCG00012656
AMCG00012655 mRNA downstream 67083 2421608 ~ 2431840 (-) True AMCG00012655
AMCG00012648 mRNA downstream 153706 2319527 ~ 2345217 (-) True AMCG00012648
AMCG00012649 mRNA downstream 181804 2316002 ~ 2317119 (-) True AMCG00012649
AMCG00012646 mRNA downstream 681723 1583313 ~ 1817200 (-) True AMCG00012646
AMCG00012663 mRNA upstream 377425 2877768 ~ 2910246 (-) True AMCG00012663
AMCG00012664 mRNA upstream 421358 2921701 ~ 2962489 (-) True AMCG00012664
AMCG00012665 mRNA upstream 587093 3087436 ~ 3100475 (-) True AMCG00012665
AMCG00012662 mRNA upstream 620857 3121200 ~ 3170801 (-) True AMCG00012662
AMCG00012666 mRNA upstream 702811 3203154 ~ 3272283 (-) True AMCG00012666
TU47984 other downstream 314760 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 721702 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 1959332 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 3955378 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 6612098 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 9740053 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 10614550 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 15379882 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile