Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU48134 |
| length | 1160 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G38611 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 2934276 ~ 2935435 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0072329 | monocarboxylic acid catabolic process | biological_process |
| GO:0017001 | antibiotic catabolic process | biological_process |
| GO:0019541 | propionate metabolic process | biological_process |
| GO:0019543 | propionate catabolic process | biological_process |
| GO:0009062 | fatty acid catabolic process | biological_process |
| GO:0019626 | short-chain fatty acid catabolic process | biological_process |
| GO:0046459 | short-chain fatty acid metabolic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU48081 | lncRNA | upstream | 235486 | 2698406 ~ 2698790 (+) | True | G38568 |
| TU48079 | lncRNA | upstream | 235955 | 2697842 ~ 2698321 (+) | True | G38566 |
| TU48067 | lncRNA | upstream | 263307 | 2670645 ~ 2670969 (+) | True | G38554 |
| TU48066 | lncRNA | upstream | 298246 | 2635618 ~ 2636030 (+) | True | G38553 |
| TU48064 | lncRNA | upstream | 317079 | 2616922 ~ 2617197 (+) | True | G38551 |
| TU48135 | lncRNA | downstream | 1122 | 2936557 ~ 2936894 (+) | True | G38612 |
| TU48136 | lncRNA | downstream | 3556 | 2938991 ~ 2939222 (+) | True | G38613 |
| TU48137 | lncRNA | downstream | 4420 | 2939855 ~ 2940082 (+) | True | G38614 |
| TU48138 | lncRNA | downstream | 5415 | 2940850 ~ 2941217 (+) | True | G38615 |
| TU48139 | lncRNA | downstream | 6701 | 2942136 ~ 2942418 (+) | True | G38616 |
| AMCG00012658 | mRNA | upstream | 83063 | 2811998 ~ 2851213 (+) | True | AMCG00012658 |
| AMCG00012657 | mRNA | upstream | 394095 | 2500058 ~ 2540181 (+) | True | AMCG00012657 |
| AMCG00012651 | mRNA | upstream | 529919 | 2397489 ~ 2404357 (+) | True | AMCG00012651 |
| AMCG00012652 | mRNA | upstream | 542572 | 2361338 ~ 2391704 (+) | True | AMCG00012652 |
| AMCG00012654 | mRNA | upstream | 573351 | 2359186 ~ 2360925 (+) | True | AMCG00012654 |
| AMCG00012659 | mRNA | downstream | 241963 | 3177398 ~ 3181902 (+) | True | AMCG00012659 |
| AMCG00012660 | mRNA | downstream | 248745 | 3184180 ~ 3184551 (+) | True | AMCG00012660 |
| AMCG00012661 | mRNA | downstream | 250575 | 3186010 ~ 3186423 (+) | True | AMCG00012661 |
| AMCG00012667 | mRNA | downstream | 533635 | 3469070 ~ 3477927 (+) | True | AMCG00012667 |
| AMCG00012669 | mRNA | downstream | 650949 | 3586384 ~ 3611175 (+) | True | AMCG00012669 |
| TU47823 | other | upstream | 2109568 | 820524 ~ 824708 (+) | False | AMCG00012639 |
| TU48550 | other | downstream | 1434878 | 4370313 ~ 4373574 (+) | True | G38954 |
| TU48986 | other | downstream | 2616982 | 5552417 ~ 5552767 (+) | True | G39297 |
| TU49057 | other | downstream | 2872411 | 5807846 ~ 5823320 (+) | False | AMCG00012718 |
| TU49223 | other | downstream | 3581973 | 6517408 ~ 6517921 (+) | False | AMCG00012748 |
| TU49477 | other | downstream | 4790053 | 7725488 ~ 7727828 (+) | True | G39670 |
