RNA id: TU48136


Basic Information

Item Value
RNA id TU48136
length 232
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G38613
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2938991 ~ 2939222 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTACTCAACATCATCTCCCAGCAGCCCCGTATCATTCAGGGTGTACTTGGCTTTCTTCATCACAGCATCCACAGGCCCCTTCTCCACCTGGTGCTTGATAGCCTTGAATAGCTTGTACAGTGGTTCACCTGCAGAGTCctacacagatgcacacaggcTCAGGTTTGTGTCAAACTAtgacatttttagaaaatgttaagttttaaatctaacaaaaaaacaaccactaTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48135 lncRNA upstream 2097 2936557 ~ 2936894 (+) True G38612
TU48134 lncRNA upstream 3556 2934276 ~ 2935435 (+) True G38611
TU48081 lncRNA upstream 240201 2698406 ~ 2698790 (+) True G38568
TU48079 lncRNA upstream 240670 2697842 ~ 2698321 (+) True G38566
TU48067 lncRNA upstream 268022 2670645 ~ 2670969 (+) True G38554
TU48137 lncRNA downstream 633 2939855 ~ 2940082 (+) True G38614
TU48138 lncRNA downstream 1628 2940850 ~ 2941217 (+) True G38615
TU48139 lncRNA downstream 2914 2942136 ~ 2942418 (+) True G38616
TU48140 lncRNA downstream 3513 2942735 ~ 2987981 (+) True G38617
TU48204 lncRNA downstream 182024 3121246 ~ 3124370 (+) True G38673
AMCG00012658 mRNA upstream 87778 2811998 ~ 2851213 (+) True AMCG00012658
AMCG00012657 mRNA upstream 398810 2500058 ~ 2540181 (+) True AMCG00012657
AMCG00012651 mRNA upstream 534634 2397489 ~ 2404357 (+) True AMCG00012651
AMCG00012652 mRNA upstream 547287 2361338 ~ 2391704 (+) True AMCG00012652
AMCG00012654 mRNA upstream 578066 2359186 ~ 2360925 (+) True AMCG00012654
AMCG00012659 mRNA downstream 238176 3177398 ~ 3181902 (+) True AMCG00012659
AMCG00012660 mRNA downstream 244958 3184180 ~ 3184551 (+) True AMCG00012660
AMCG00012661 mRNA downstream 246788 3186010 ~ 3186423 (+) True AMCG00012661
AMCG00012667 mRNA downstream 529848 3469070 ~ 3477927 (+) True AMCG00012667
AMCG00012669 mRNA downstream 647162 3586384 ~ 3611175 (+) True AMCG00012669
TU47823 other upstream 2114283 820524 ~ 824708 (+) False AMCG00012639
TU48550 other downstream 1431091 4370313 ~ 4373574 (+) True G38954
TU48986 other downstream 2613195 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 2868624 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 3578186 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 4786266 7725488 ~ 7727828 (+) True G39670

Expression Profile