RNA id: TU48345


Basic Information

Item Value
RNA id TU48345
length 1766
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G38791
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3554385 ~ 3638866 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTGGGCAtcgtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatagtacaATGACCAATGACTGAAAGGgactatttttctatttaatgttaaaatgtataaaacattatttacacaCACCAGTCCCCCATCCCTCAGTGCAGGTTAGCATTTCCCCGTAAGTGACCAAGGCTTACATTGTGGTCTGGGAGGCCTGAGCTTAACCCTTAAGCTCTCTCCATGGCAGTGGAGTGACTATGGATCACAGTATTGCCCAAGAACTTCCCTCAATCCCCACCACAGTTTAGATAAGAGGACCTCAGGCAGTCTTAGTTTTCATCTGCCTCTACCCTGGCCTCAGGGCAAACTGTCAGCTCCCACTCAGACACACTCaaatacaaacatgcacacacacccaaCATGCACAGACTCAATAAGATACACAAATCTATAGACACACATTCTGATGAAGTTCATGATGTGAGATAATACCTGAATGAGAGAACATGAGGACAAGTGTGGGACCTGGGTGTGTTCAAGACTCCGAACAGCAGACATGTCTTTacagacacatacatttattaatttaccatTTACCATAAATCTAATTCAATGGTTCACAACCCTAGTCCTGGGCACCCACTCCATCTGCAATCCCCAgtaattgaaaccttaattgaagtaataatttgcttttaaaatggatttaacTTGAATTAAGTGGAGATTTCAGGTGCCttgtatatttttagatttaacTTTCTATGGTCTGAGATTATTAATACGATCTACTTAGGTCAATTATTAGTCTCATGTGGACATTGGTAAACCACGGATCTAAttgatgtaaatgtaattttagcCAGGCAATGTAGTGGTCAGTTGCTCAATGTCTACGTTAATGTCTTTCAATTCAGGTACGATTTACCTATGTCCTGTTTAAGTGTCCCAGGAGAATGGGGTCCAGATGCCGACAATATACACTAAAattgctacacacacacacacaggactaATGATATACTGTATAGTGTATACGGTTATGTGCTACTTAgaaggtgacttacaattgttcacattatttttacccatttatGCAGATgtgttttactggagcaatctaggtgtaaagtaccttgttcaatgatacaacagcagtgtcccccactgATTGAACCCACGATCCTgtgctcaggagtccagagtcCTGACCACTGCTCCACACTGTTGCTCATACTAAATTATAAGCATTGCCAAATGAATCAGATAATGCTCCTCTTATTTAATCAAGTCAAACCTACATGACATTACAGTTCACATGATaatcacaatacaataatgCTATGCTCATCTACATTACAAAGTAATGTGATGCTAcggctttctctctctcttggtaACTGAAAGGTGGCACAACTGCAGCATACAGCGCTTACAGCAGTCCACCTTCGATTTCATGTTTTCAAGCAGCGCTTTTCTCTTCCGGTAAGTCGCAAAGACAACTGGGGGAAAATCGacgatgtatttattgtgtgtataaCAAGtcattctagatcatgtaaaatgtttacaggtctatatttttattttattgtattttatgtattttattttactgtatgtttgttgtatgtttaccagcctgtaaagcgctctgtggctaccctgcgaagggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48287 lncRNA downstream 123049 3429936 ~ 3431336 (-) True G38743
TU48283 lncRNA downstream 206738 3311332 ~ 3347647 (-) True G38740
TU48180 lncRNA downstream 632723 2916028 ~ 2921662 (-) True G38650
TU48095 lncRNA downstream 762861 2778850 ~ 2791524 (-) True G38581
TU48086 lncRNA downstream 779183 2726029 ~ 2775202 (-) True G38573
TU48413 lncRNA upstream 144294 3783160 ~ 3783391 (-) True G38841
TU48414 lncRNA upstream 144938 3783804 ~ 3784050 (-) True G38842
TU48496 lncRNA upstream 335487 3974353 ~ 3976596 (-) True G38909
TU48498 lncRNA upstream 398573 4037439 ~ 4096741 (-) True G38910
TU48565 lncRNA upstream 488141 4127007 ~ 4517632 (-) True G38965
AMCG00012668 mRNA downstream 133357 3349631 ~ 3421028 (-) True AMCG00012668
AMCG00012666 mRNA downstream 282102 3203154 ~ 3272283 (-) True AMCG00012666
AMCG00012662 mRNA downstream 383584 3121200 ~ 3170801 (-) True AMCG00012662
AMCG00012665 mRNA downstream 453910 3087436 ~ 3100475 (-) True AMCG00012665
AMCG00012664 mRNA downstream 591896 2921701 ~ 2962489 (-) True AMCG00012664
AMCG00012670 mRNA upstream 13341 3652207 ~ 3663213 (-) True AMCG00012670
AMCG00012674 mRNA upstream 39813 3678679 ~ 3721400 (-) True AMCG00012674
AMCG00012672 mRNA upstream 88580 3727446 ~ 3729646 (-) True AMCG00012672
AMCG00012671 mRNA upstream 99878 3738744 ~ 3754995 (-) True AMCG00012671
AMCG00012673 mRNA upstream 118229 3757095 ~ 3772987 (-) True AMCG00012673
TU47984 other downstream 1370222 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 1777164 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3014794 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 2816855 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 5473575 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 8601530 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 9476027 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 14241359 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile