RNA id: TU48407


Basic Information

Item Value
RNA id TU48407
length 2267
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G38836
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3757717 ~ 3760103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGGCTTCCCCTGCAGCTTCTCAATATCAGTGTGGACCATTGGGATGCGAGGGTCATCATAGCTGATCacctgcctgagagagagacaacagaAGGGACTCTGTTATTAACCATCTCTGAACCTCCTCCCAATCAGCAGATGGCCGAGTGAGGAAAGTGGACTGACCAGCTGACGTTATGCGGCCGCAAGACAACGTGGCGATAGGCTCCGGACAGGGAGTAGTCCCGGATGCGGTGTCGCATGTTGTCAATGTCCAGACCGTCTGCCTTCAGCATCTCCCTGTACCCCTCACTGTGGTGGGAGGGATAGATGACATCAAAACCAGGCAGGGGCATAACAATGTCATGTATGGAGTGGCTCTCAGCCTCAGCTTTGGAGAGCAGAACTGCCGTGCCTGTAAGAAACATTAAATCGCACTTGGATTGTACTGGATCATAACCCACCCTTTCCAGCTACATGGTGTCTGTACTGCCTTTCCCAGCCACTGCACAGTACCTTACACTCACCTAAGTCCGCACATATTTTATcttaattcttgtttttttaaacaatctggTCTGTTTACCGTTTAAAAAagcaactgtgggacctcccaaaGTATAGGTTGCCCCGCCTCACCTCCACGCAGTACCAGGTCCCCTGGCACAGCAATCAGCCCGAATGCCTCAATGCGTCGGCTCACCATGCAGTTCCATACGAAGCTCTGATAGCTGTGTATGTACATCAGCCGGTTATTGCGGGGGATCTGTGGGACACCACAGGGGCACTGAGTCAGTGATACACACCACACTGAGACATGCCCAAACGCACTCTGAGGCATTCCCTCACCAGACCAAAGGCAGTGACAATGTTGTTCTTGCCGTGTCTAGCCAGGCCACGCAGCAGCTGCCCCTCCACACATCGCTTCACCGGGAGCTTCCTCAGTGCTGCCTCAGGGTCCTGGGACCGGGCCCACTCCTCCCGGCAACGCACCAGATAACCTTTTTCTGCTGAGGGGGGGCAGTGTAAGAGAGAGTTGTGAGGGGGACAAGACAGTGAGAGATTGAGGGAGTGAGAGGGGAAAATGTAAGAAAGGGAAGGGAGAAAGACAGAAGAAGAGAGACCGATAATAGAGACACTTAGGGAGGTAAAGACTGACAGAGGAAGGGAACATAGCGAGAAACAGGGGCACAGATTATGACAGAAGGATGAAACAATGAAGAGCAGGGGCAGATTACAGCATTAGCACAGGAAATGGAGTGAAGGGGAACCAGCagagaacaaaatattaaagGTTGACATGAAGGGTGCAGTGAATCCAATGACAGCAAATAAACTACCTCCAGGGCGGGGCTTCAGGATCAAATCCATCACCTCTTTCCAACTGTTCTGCAGGATTGCCCTGATTGACAGGCAAAGAAACACAATCAGCTGGATCTAATACAGGGTTATTTTTATCCACATACTCTTACCTGTCCCTCCTGACACAACCCTTTACCTGTCCCCCCTGACCCAGCCCTGCAGGTACTCCTTACCTGCCAACCTGGTATGTGGGCACAGCTGTAGTGCCAAAGCGCTGCATGCCGTAGTAGTTGATGAAACCGGTGTCCCTTAGGGAGGTCATGGCCTGCTCCACCTGCTGATCAGAGCCAGAGATATTCCTGCAGAGAAATgtccattacacacacaaacacaaagacacctCTGAGCCACAGATAATCCTGCAAAGAGAcatcaatcacacacacacagagacgcagacacaaacagaaacaactaGAGCTAGAGATATTCCCAACAAAACAGACAACTTATTTCTTAAGCAGCACCACTCTGACCTGATCACCACAGTGAAGTGATTCCCCTGTAGCTCCCCCAGCTTCAGAGGGTGTTTCTTGTAGCTGAAGTTTCCCAGTTTGAAGTTCATCAGGCACTTGTTGAGATGCGACAGTCTCTGAGCACTGATCCTGCACAGTGATTGTGGGTGAGGGgagagtggaaaaaaacacaaataacttcTAAAATCATGATTGTATGCGTCATTTTGGGTTTGCTGTAGTGTATAAGATGTAAAGCACTCTTCCAGATAatttctatcatataagcaacttttaaaacttcaaAATTATGACGGATGTCAAAAGCTAGCATAATGCAATACATCCTGAAATTGTGAAAGAGCATCATAAACTCCTGGATAGAAAAACTACAAATTCACAAGATGCGTCTTCCCCACAGCAACTTGAGCCATTATTTTGTCATGTTCTTACTcattgatagtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48391 lncRNA upstream 13391 3739791 ~ 3744326 (+) True G38824
TU48384 lncRNA upstream 85003 3672474 ~ 3672714 (+) True G38818
TU48313 lncRNA upstream 116433 3638310 ~ 3641284 (+) False G38766
TU48312 lncRNA upstream 118851 3554322 ~ 3638866 (+) True G38766
TU48410 lncRNA downstream 10733 3770836 ~ 3772238 (+) True G38838
TU48415 lncRNA downstream 31373 3791476 ~ 3793774 (+) True G38843
TU48417 lncRNA downstream 34978 3795081 ~ 3882418 (+) True G38845
TU48463 lncRNA downstream 202260 3962363 ~ 3962573 (+) True G38882
TU48469 lncRNA downstream 214262 3974365 ~ 3976617 (+) True G38886
AMCG00012669 mRNA upstream 146542 3586384 ~ 3611175 (+) True AMCG00012669
AMCG00012667 mRNA upstream 279790 3469070 ~ 3477927 (+) True AMCG00012667
AMCG00012661 mRNA upstream 571294 3186010 ~ 3186423 (+) True AMCG00012661
AMCG00012660 mRNA upstream 573166 3184180 ~ 3184551 (+) True AMCG00012660
AMCG00012659 mRNA upstream 575815 3177398 ~ 3181902 (+) True AMCG00012659
AMCG00012675 mRNA downstream 126035 3886138 ~ 3900561 (+) True AMCG00012675
AMCG00012679 mRNA downstream 374485 4134588 ~ 4158381 (+) True AMCG00012679
AMCG00012680 mRNA downstream 401397 4161500 ~ 4183082 (+) True AMCG00012680
AMCG00012681 mRNA downstream 423772 4183875 ~ 4244236 (+) False AMCG00012681
AMCG00012687 mRNA downstream 553779 4313882 ~ 4319599 (+) True AMCG00012687
TU47823 other upstream 2933009 820524 ~ 824708 (+) False AMCG00012639
TU48550 other downstream 610210 4370313 ~ 4373574 (+) True G38954
TU48986 other downstream 1792314 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 2047743 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 2757305 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 3965385 7725488 ~ 7727828 (+) True G39670

Expression Profile