RNA id: TCONS_00009313


Basic Information

Item Value
RNA id TCONS_00009313
length 677
RNA type nonsense_mediated_decay
GC content 0.49
exon number 5
gene id XLOC_004703
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22657923 ~ 22664563 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGAGTTGATAAATGGCAGAGAAAGACTTCAGGCCTTTATCAGAGGAAACCAGTTCCTTCTGTCTGGCTACTGAGGCTCGTTCGGGGGTACAAGTCACGCAACCCTTCCCACGCTCTCCAAAACTAATCAAGAGAACTGGAGCCGTCTCTCCAAAACCCTTTGAgCTGCCAGTCTTGTTGGAGGACTTGAAGAAGGAGAGGAAAAAAACAGAATCTCATCTGGAATCTGTTAAAAAGCGGCAAGCAAACCTCACATAACTGCTGAATTGTTCATCTCTGGTGAAGACGAGTTCAGAGGCGATGAAGCAGCAGGTACAGGAGTGCTACGAGGGTCTACATTTGGCTCTGCAGGAGGATGAGCGGGCCGTTCTGGACATGATAGAGCAAGACCGCCGGGAAACCAGCAGCAAACTAAATCGAATTCTTCAAGACTGGAATCAGCACCTCTGTCTCCTGCAGAAGCACATCTCCTGCATGCAGTTGGTACAAAGCCCAGAGGAGGCCGTGAAGCAGCCATTTCCTGAGGATTTTACATTGGCAGGCTGTCGTAAGAAGCCGGACCCCGCTGAAGGGGAAATCAAAATGAATGAGGAAAGAATCCTGAAGCTCATGAAGGTTCTTAGAAACATCTCAAAAGATCTGAAGGCCCAGCTACAAAGAAAGAGCCTGCTTCTGG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-59 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000163755

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010735 lncRNA upstream 38801 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00009303 lncRNA upstream 230868 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010927 lncRNA upstream 353082 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 398525 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010926 lncRNA upstream 638153 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010928 lncRNA downstream 376067 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010929 lncRNA downstream 793049 23454429 ~ 23605722 (+) False XLOC_004711
TCONS_00010930 lncRNA downstream 793078 23454458 ~ 23605722 (+) False XLOC_004711
TCONS_00010931 lncRNA downstream 793148 23454528 ~ 23469341 (+) False XLOC_004711
TCONS_00010932 lncRNA downstream 793148 23454528 ~ 23491893 (+) False XLOC_004711
TCONS_00009312 mRNA upstream 12708 22628704 ~ 22645215 (+) True XLOC_004702
TCONS_00009311 mRNA upstream 39843 22607761 ~ 22618080 (+) True XLOC_004699
TCONS_00009309 mRNA upstream 50036 22580627 ~ 22607887 (+) False XLOC_004699
TCONS_00009310 mRNA upstream 50036 22588923 ~ 22607887 (+) False XLOC_004699
TCONS_00009306 mRNA upstream 53612 22576404 ~ 22604311 (+) False XLOC_004699
TCONS_00009315 mRNA downstream 10943 22672323 ~ 22678549 (+) False XLOC_004704
TCONS_00009316 mRNA downstream 10945 22672325 ~ 22678549 (+) False XLOC_004704
TCONS_00009317 mRNA downstream 12650 22674030 ~ 22678551 (+) False XLOC_004704
TCONS_00009318 mRNA downstream 12706 22674086 ~ 22678548 (+) False XLOC_004704
TCONS_00009320 mRNA downstream 18735 22680115 ~ 22815847 (+) False XLOC_004704
TCONS_00009307 other upstream 79393 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009304 other upstream 213151 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009299 other upstream 863807 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009295 other upstream 1220465 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009286 other upstream 1965910 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009319 other downstream 16573 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009330 other downstream 260097 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009332 other downstream 448783 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009336 other downstream 915886 23577266 ~ 23577391 (+) True XLOC_004712
TCONS_00009341 other downstream 1177419 23838799 ~ 23866353 (+) False XLOC_004717

Expression Profile

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