RNA id: TU48414



Basic Information


Item Value
RNA id TU48414
length 247
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G38842
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3783804 ~ 3784050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caccgatcagccataacattatgaccactgacaggtgaagtgagtaacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttatcctcaaagttgatgtgttagaagcaggaaaaaatgggcaagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU48413 lncRNA downstream 413 3783160 ~ 3783391 (-) True G38841
TU48345 lncRNA downstream 144938 3554385 ~ 3638866 (-) True G38791
TU48349 lncRNA downstream 221954 3506837 ~ 3561850 (-) True G38792
TU48287 lncRNA downstream 352468 3429936 ~ 3431336 (-) True G38743
TU48283 lncRNA downstream 436157 3311332 ~ 3347647 (-) True G38740
TU48496 lncRNA upstream 190303 3974353 ~ 3976596 (-) True G38909
TU48498 lncRNA upstream 253389 4037439 ~ 4096741 (-) True G38910
TU48565 lncRNA upstream 342957 4127007 ~ 4517632 (-) True G38965
TU48618 lncRNA upstream 543033 4327083 ~ 4329635 (-) True G39017
TU48782 lncRNA upstream 1001644 4785694 ~ 4786528 (-) True G39160
AMCG00012673 mRNA downstream 10817 3757095 ~ 3772987 (-) True AMCG00012673
AMCG00012671 mRNA downstream 28809 3738744 ~ 3754995 (-) True AMCG00012671
AMCG00012672 mRNA downstream 54158 3727446 ~ 3729646 (-) True AMCG00012672
AMCG00012674 mRNA downstream 62404 3678679 ~ 3721400 (-) True AMCG00012674
AMCG00012670 mRNA downstream 120591 3652207 ~ 3663213 (-) True AMCG00012670
AMCG00012676 mRNA upstream 77998 3862048 ~ 3863424 (-) True AMCG00012676
AMCG00012677 mRNA upstream 196740 3980790 ~ 3990090 (-) True AMCG00012677
AMCG00012678 mRNA upstream 231122 4015172 ~ 4024403 (-) True AMCG00012678
AMCG00012682 mRNA upstream 519945 4303995 ~ 4308720 (-) True AMCG00012682
AMCG00012683 mRNA upstream 565057 4349107 ~ 4367364 (-) True AMCG00012683
TU47984 other downstream 1599641 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2006583 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3244213 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 2671671 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 5328391 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 8456346 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 9330843 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 14096175 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile