RNA id: TU48550


Basic Information

Item Value
RNA id TU48550
length 1428
RNA type TUCP
GC content 0.38
exon number 4
gene id G38954
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4370313 ~ 4373574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accctggaacagaggagactatgtggggacttgatccaagtcatcaaaatcatgaagggcattgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacctggggacacaaatggaaattgggctacaaggcattcaaaacagaaaacaggagacacttggCATGTTTCGGCACTTTTGAAGCAAGGGAGGCTGTCCAAGTACAAATCATATATGCAATGTGGAAGCCTCTTTCCAGCAACTTCAGGTGTCCTCAGGAGGTACAACTCCAGTCTGGCAATTCAAGGGGAACAGTGGCAAGTGGTACAACTTCAAACACAGAAGTGGTAATGACACCGAATGTTCAATCTCAAGCAGAGATATAGAAGACCAGTATCAGCACAACCCTGCAGGCTCTATGACTTTCACTGCTGGCATATATCAGTATTCCCTGGACTTCTTAGGTATGACCCAGACCAATTTGGCTTCCAATAAGACACGACAAATACAACGTATTACAATCTAATGAAGGGAAGATTATATGCGCAATACTGATAAACGCTTCCATGCATTAAATTGTACCTTAGCTTTATAACCCTTGGAAACTATACACTCactttaacatatatatattttttaagcagGGATGGGATTGGCACTTCAGAATTGCATACCTCTCACACAGCCATATTGCCTTATGGAAGAACTGTTATTTCATTTCACTGTCCTTAAGCTGCCTTAAATTTAACTTCCACTGCCAGACTAATGCCAATTTAAAATTCTGCGGAGACATGAAAAGTCTGATTGTTTTCACTAtatgcattttccttttcaatatATGTATTGCTCAGTGTTGAGGGAAATGTGCATTGTACTGTAACCCTTTATATCAGATGCCAGCTGTATTTgttataacaaaaaatgtatttcccatGTTCACATCTGTATTCTGGTCTGTGGATTGCCAAGAAATAAAGTCCTGGATTAGGTCAGAGGAAGTTACTAAAGTAATACTAAGCTGCATCTATAAAATGGACGGTTTGATTCACAATCACATCCCCATTTGGAATACTAATGGCCTAAAGCCATAGTTTAACAATGGTGTGTTATGGCTCTGCTTAACTGTACAATGTATAGCCCATTAACACAGAACAGTCTAGTATgctttttaaagctgtttaaCTGTCCTGTGCAATGATCTGTTAAAAACTTGATACAACCAGATAGCCATAATATGTACTTCCTTCTTGTCAGTGACTCattggtgttgtgttgtggtatAATGTTATGTCAAAGTCGAcagtttacaatatttatatatatcacacaatGCAAGTACCAGTTCATTTCTTTGTGGTTGTCTAAGATGCTATAATTCTAGATTATGAAAAGCCAAACATttcttaacaaaatataaatacaaatttacaaaGCAA

Function

GO: NA

KEGG:

id description
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48518 lncRNA upstream 118719 4243999 ~ 4251594 (+) True AMCG00012681
TU48469 lncRNA upstream 393696 3974365 ~ 3976617 (+) True G38886
TU48463 lncRNA upstream 407740 3962363 ~ 3962573 (+) True G38882
TU48417 lncRNA upstream 487895 3795081 ~ 3882418 (+) True G38845
TU48415 lncRNA upstream 576539 3791476 ~ 3793774 (+) True G38843
TU48563 lncRNA downstream 143562 4517136 ~ 4517631 (+) True G38964
TU48821 lncRNA downstream 575666 4949240 ~ 4955867 (+) True G39186
TU48836 lncRNA downstream 663973 5037547 ~ 5074126 (+) True G39193
TU48966 lncRNA downstream 1063259 5436833 ~ 5437162 (+) True G39279
TU49015 lncRNA downstream 1274200 5647774 ~ 5648107 (+) True G39321
AMCG00012685 mRNA upstream 21557 4329671 ~ 4348756 (+) True AMCG00012685
AMCG00012686 mRNA upstream 41159 4320973 ~ 4329154 (+) True AMCG00012686
AMCG00012687 mRNA upstream 50714 4313882 ~ 4319599 (+) True AMCG00012687
AMCG00012681 mRNA upstream 126077 4183875 ~ 4244236 (+) False AMCG00012681
AMCG00012680 mRNA upstream 187231 4161500 ~ 4183082 (+) True AMCG00012680
AMCG00012700 mRNA downstream 165450 4539024 ~ 4577184 (+) True AMCG00012700
AMCG00012706 mRNA downstream 220518 4594092 ~ 4600032 (+) True AMCG00012706
AMCG00012697 mRNA downstream 247946 4621520 ~ 4623236 (+) True AMCG00012697
AMCG00012695 mRNA downstream 276724 4650298 ~ 4653916 (+) True AMCG00012695
AMCG00012699 mRNA downstream 296985 4670559 ~ 4675212 (+) True AMCG00012699
TU47823 other upstream 3545605 820524 ~ 824708 (+) False AMCG00012639
TU48986 other downstream 1178843 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 1434272 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 2143834 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 3351914 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 3461772 7835346 ~ 7836214 (+) True G39709

Expression Profile