RNA id: TU48565


Basic Information

Item Value
RNA id TU48565
length 946
lncRNA type read_through
GC content 0.40
exon number 2
gene id G38965
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4127007 ~ 4517632 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NTGTAGCCCATCCGCCTCAAGGTTGTACgtgttgtggcttcacaaatgATTTGCTACATACCTCGATTGTAACGtgtggttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgtgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattcatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtacacacatgctcaaatttgttggtaccctcaGCTCAGTAAAATAATGCTTCATCCCTCCTGAAAagttatgaaattaaaagctattgcatcacttatacttgcatgcctttggtatgtcacagaataaagcaaagaagctgtgaaaagagatgcattattgctcattctgcaaagatattctaaaatggcctggacacatttgttgggaccccttagaaaagataataaataattggattatagtgatattccaaactaattagtttctttaattagtatcacacgtctccaatcttgtaatcagtcattcagcctatttaaatggaggaaagtagtcactgtgcacacaatgataccaaatggcaccACACTGAACCAGAGAAAGCAatggagagagttgtctgaggagatcagaaagaaaatagacaagcatggtaaagataaagataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48498 lncRNA downstream 30266 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 150411 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 342957 3783804 ~ 3784050 (-) True G38842
TU48413 lncRNA downstream 343616 3783160 ~ 3783391 (-) True G38841
TU48345 lncRNA downstream 488141 3554385 ~ 3638866 (-) True G38791
TU48782 lncRNA upstream 268062 4785694 ~ 4786528 (-) True G39160
TU48808 lncRNA upstream 396371 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 412156 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 413612 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 488503 5006135 ~ 5006607 (-) False G39189
AMCG00012678 mRNA downstream 102604 4015172 ~ 4024403 (-) True AMCG00012678
AMCG00012677 mRNA downstream 136917 3980790 ~ 3990090 (-) True AMCG00012677
AMCG00012676 mRNA downstream 263583 3862048 ~ 3863424 (-) True AMCG00012676
AMCG00012673 mRNA downstream 354020 3757095 ~ 3772987 (-) True AMCG00012673
AMCG00012671 mRNA downstream 372012 3738744 ~ 3754995 (-) True AMCG00012671
AMCG00012690 mRNA upstream 106283 4623915 ~ 4642672 (-) True AMCG00012690
AMCG00012691 mRNA upstream 167284 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012689 mRNA upstream 243053 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012693 mRNA upstream 269902 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012692 mRNA upstream 322595 4840227 ~ 4846796 (-) True AMCG00012692
TU47984 other downstream 1942844 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2349786 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3587416 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1938089 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4594809 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7722764 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8597261 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13362593 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile