RNA id: TU48618


Basic Information

Item Value
RNA id TU48618
length 1253
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G39017
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4327083 ~ 4329635 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAGTGCAGGAAGTGGCGGCTGTAGAGTGTCAAAGATGTTACAgagaagaatgaaaacaaacaggattTCCAGTATTTGACGcgacaggtttttttttaacgtCAGTCTCCCCAGTGTGGAGGGTGGTGTTCTGAGTTAGATCCTGGATTAGCTGCTGGAGCTGCTTCATTGTTGCCAGTTCCCTTTGTTCTTCATACTGCTCCACTGTCAACTGCTGACAGAATGTGAACGCTGACaacgagaaaaaaaatgaaatatatatattataaaagcaaGATAGGTCACCGAAAGAGGTTTCAGAAATCTACTTTTGCCATAGTGCTAAGCCACTATTACAGTATAAATTCAGCTTCATTTTCAACCCACTTTCAAACTTAATTCCCTACATGTGGTGACTGATTAAGAACTGTTAAAAACAGGTCATTTGACTCCCTGTCATAATAATGACAATTAAGAATGGAGgtagaatgaaaaccagaattCCCCTTCAACCTCAAGGACTGGAACTGCCTACACCTggttaaatcaaatataatctATCTTTAGAGACACTGGTGTAAAGAGTATTTTTTGCTTCATATTATACATGGAAGGTATCAGAAACTGAACTTCGATACTGTATGCATCAGCATAGCAGGGTGAAATTCTACTGGAGCACTGGAAGTGAAGAAAGAAGACCTACCAGCTGTGGTATCTGGATCTCTTCCTTGTTGTAAAGTCTGAAGCTGCTTGGTAACTGTCTCTATCAGTGATACTGGAGTCTATTTCaatgaatattaattttaaaaatggttaGATTTATGCATGAAGTAAATTTGATTTATCATTAAgtgcagctttcaaaaacaatgtatattgtatagttaggtccataaatatttggacagtgacaaaattgtcatcattttggctctttacgtcaccacaatggatttgaaaggaaactatgtgctttaagtgtagactttcatctttaatttgagggtagttacatccaaattgggtgatcggagtaggaattacacacatttttatatgaccaatgagttttgaagcatttggctgaatctgagcagataatatagccctaaacacttcagaattcatcctgttGCTTTTGTAAGCAGTCatataatcaataaatacaagggaaccagttcccttggcagccatacatgcccatgccataaaaCTACCTCTGCCATGCTTCGGATCAttagcagttccttcccttctccatattcttctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48498 lncRNA downstream 230342 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 350487 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 543033 3783804 ~ 3784050 (-) True G38842
TU48413 lncRNA downstream 543692 3783160 ~ 3783391 (-) True G38841
TU48345 lncRNA downstream 688217 3554385 ~ 3638866 (-) True G38791
TU48782 lncRNA upstream 456059 4785694 ~ 4786528 (-) True G39160
TU48808 lncRNA upstream 584368 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 600153 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 601609 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 676500 5006135 ~ 5006607 (-) False G39189
AMCG00012682 mRNA downstream 18363 4303995 ~ 4308720 (-) True AMCG00012682
AMCG00012678 mRNA downstream 302680 4015172 ~ 4024403 (-) True AMCG00012678
AMCG00012677 mRNA downstream 336993 3980790 ~ 3990090 (-) True AMCG00012677
AMCG00012676 mRNA downstream 463659 3862048 ~ 3863424 (-) True AMCG00012676
AMCG00012673 mRNA downstream 554096 3757095 ~ 3772987 (-) True AMCG00012673
AMCG00012683 mRNA upstream 19472 4349107 ~ 4367364 (-) True AMCG00012683
AMCG00012684 mRNA upstream 50238 4379873 ~ 4381284 (-) True AMCG00012684
AMCG00012688 mRNA upstream 177992 4507627 ~ 4508220 (-) True AMCG00012688
AMCG00012690 mRNA upstream 294280 4623915 ~ 4642672 (-) True AMCG00012690
AMCG00012691 mRNA upstream 355281 4684916 ~ 4696006 (-) True AMCG00012691
TU47984 other downstream 2142920 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 2549862 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 3787492 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 2126086 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4782806 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7910761 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8785258 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13550590 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile