RNA id: TU48782


Basic Information

Item Value
RNA id TU48782
length 772
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G39160
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4785694 ~ 4786528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcagcaggggatcaaatacttttttccctcactgtatatatattattttatataaatattctgAAGCAGTCATCTCCTTGACTTCTGCATCTTAACTGTAATATCTTTGTCAAGATGTTTTTCTGGTTTGAGTAgattttgcatttgtaaatcTATCACTAACATATaagtcagaaaaacaaaaaaaaagatatttacAATACTTGAAAACATATAATGCagattataatatacatatactgGATTTTCCGATTCAGAGTTGCACGCttacatatgtacatatataacaaGGCCTTATGAACAGTGAAAGGAGATGTTTTCTAATATTTCTAATTCAATGTAGGTTGGCAGTTACACTACCCATAACAATAACTCTATTATCtactcaaaataaaaagttgtaaatgcatatgtgtgtattatttacAGATCTCttgataatatattaaatacataaatcagacTGACAGTGAATATTTGTTGTTGCTATTTGTACGAGACTGTTATGAGAGCAGCAGggtttttcttaattaaatcgGTACAGAATATCAGAATatcttcttttgttgttgttgtttcgtttagtttttttctcaaatgaaaGGCTTTTCTTGGattgtttctttattgattCACTTTTCCTCATTGTATTTGTGTAGAAAAATGACTAGAACAATGTTAACCCACCTTGGACTTGTAAAGCATGCATTTTAACTGAATTATGTGGATTTGTAATTTAagctaaatgtaataaatataccATGTATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48565 lncRNA downstream 268062 4127007 ~ 4517632 (-) True G38965
TU48618 lncRNA downstream 456059 4327083 ~ 4329635 (-) True G39017
TU48498 lncRNA downstream 688953 4037439 ~ 4096741 (-) True G38910
TU48496 lncRNA downstream 809098 3974353 ~ 3976596 (-) True G38909
TU48414 lncRNA downstream 1001644 3783804 ~ 3784050 (-) True G38842
TU48808 lncRNA upstream 127475 4914003 ~ 4916594 (-) True G39174
TU48809 lncRNA upstream 143260 4929788 ~ 4930753 (-) True G39175
TU48828 lncRNA upstream 144716 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 219607 5006135 ~ 5006607 (-) False G39189
TU48887 lncRNA upstream 420076 5206604 ~ 5209859 (-) True G39231
AMCG00012689 mRNA downstream 12736 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012691 mRNA downstream 89688 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012690 mRNA downstream 143022 4623915 ~ 4642672 (-) True AMCG00012690
AMCG00012688 mRNA downstream 277474 4507627 ~ 4508220 (-) True AMCG00012688
AMCG00012684 mRNA downstream 404410 4379873 ~ 4381284 (-) True AMCG00012684
AMCG00012693 mRNA upstream 1006 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012692 mRNA upstream 53699 4840227 ~ 4846796 (-) True AMCG00012692
AMCG00012694 mRNA upstream 78341 4864869 ~ 4890898 (-) True AMCG00012694
AMCG00012705 mRNA upstream 147981 4934509 ~ 4979371 (-) True AMCG00012705
AMCG00012704 mRNA upstream 210036 4996564 ~ 5005697 (-) True AMCG00012704
TU47984 other downstream 2601531 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3008473 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4246103 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1669193 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4325913 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7453868 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8328365 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 13093697 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile