RNA id: TU48809


Basic Information

Item Value
RNA id TU48809
length 966
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G39175
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4929788 ~ 4930753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagattcaacaactaagacataaactgaataagtttcagacatgtgactaacagaaatggaataatgtgtccctgaacaaagggggggtcaagATCAAAAGTAACattcagtatctggtgtggccaccagctgcatcaagtactgcagtgcatctcctcctcatggactgcaccagatttgccagttcttgctgtgagatgttaccccactcttccaccaaggcacttgcaagttcccggacatttctggggggaatggcccttgCCCtaaccctccgatccaacaggtcccagacgtgctcaatgggattgagatccgggctcttcgctggccatgggagaacactgacattcctgtcttgcaggaaatcacatccagcgaaggtgggtttgtgcccataggcaaCGCTGTTGccagtgatgtctggtaaggacctgccttacaacaggcttACAAGCCcacagtccagcctctctcagcctattgcagACAGTCTGAgtactgatggagggattgtgcgttcctggtttaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatattcggatgtaccgatcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtccttcctgtctccctgtaatGCTGTCTTAGttgtctcacagtacggacattgcaatttattgccctggccataTCTgtagtcctcatgcctccttgcagctgAGCTcacacagatgagcagggaccctgggcatctttcttttggtgtttttcagagtcattagaaaggtctctttagtgtcctaagtttttaaaactgtgaccttaattgcctaccgtctgtaagctgttctGCTGTCTGTAAACGactgttccacaggtgcatgtttattaattgtttatggttcattgaacaagcatggaaaacattgtttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48808 lncRNA downstream 13194 4914003 ~ 4916594 (-) True G39174
TU48782 lncRNA downstream 143260 4785694 ~ 4786528 (-) True G39160
TU48565 lncRNA downstream 412156 4127007 ~ 4517632 (-) True G38965
TU48618 lncRNA downstream 600153 4327083 ~ 4329635 (-) True G39017
TU48498 lncRNA downstream 833047 4037439 ~ 4096741 (-) True G38910
TU48828 lncRNA upstream 491 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA upstream 75382 5006135 ~ 5006607 (-) False G39189
TU48887 lncRNA upstream 275851 5206604 ~ 5209859 (-) True G39231
TU48922 lncRNA upstream 290018 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA upstream 303409 5234162 ~ 5250471 (-) True G39246
AMCG00012694 mRNA downstream 38890 4864869 ~ 4890898 (-) True AMCG00012694
AMCG00012692 mRNA downstream 82992 4840227 ~ 4846796 (-) True AMCG00012692
AMCG00012693 mRNA downstream 102012 4787534 ~ 4827776 (-) True AMCG00012693
AMCG00012689 mRNA downstream 156830 4760685 ~ 4772958 (-) True AMCG00012689
AMCG00012691 mRNA downstream 233782 4684916 ~ 4696006 (-) True AMCG00012691
AMCG00012705 mRNA upstream 3756 4934509 ~ 4979371 (-) True AMCG00012705
AMCG00012704 mRNA upstream 65811 4996564 ~ 5005697 (-) True AMCG00012704
AMCG00012709 mRNA upstream 142132 5072885 ~ 5094228 (-) True AMCG00012709
AMCG00012708 mRNA upstream 166568 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012707 mRNA upstream 222522 5153275 ~ 5171222 (-) True AMCG00012707
TU47984 other downstream 2745625 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3152567 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4390197 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1524968 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 4181688 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7309643 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 8184140 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12949472 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile