RNA id: TU48836


Basic Information

Item Value
RNA id TU48836
length 3286
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G39193
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5037547 ~ 5074126 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacacacacacacacacacacacacacacacacacacgcatacatacacacatacacacacacacaattttatatacatacatatacacccACACGTATACATTGTACACCCAGACTACACTGTTTAATTCAGTAAGAACCCTgatatgttaaatacatttaaagaggaaaactgtatattaaaattTTCATTTATTAAGTTAGACCTGTGTGACTACCCAGCTGTgtgaaagcaaaacattataAGTAAAGCTTTAAAATTGTTCCGTAACAGCATTACTAAACTGATAAAGAAAAAGCGTCATGATTTTCCAGAATCAATGCTATATTGAATGTCTCTTCacactaaaaataaagtaaatagcTTAAAATGTTATCAAAACTGCAAATTctacaaagacaaaatattcTGATATGTTTGGTACTACAGATTGATTGTTTAATAAGCTATTTTCACAATGTTGAGaaactaatacttgtattacaTTACTAAGTAGTATTTACAACCTTTCGCAAGACTTGGTAAtaagcaacttttttttttttttgcctgatTCAGGAACTATTTGACCAATACACAAATGTGCAGCAAATATGCAAAAGGGAACTGCATTAACACGAATTACAGAGGACATTTAGTAAATGTATGCTCTTCAATGTATGTTAAGTTTAGCTCAAAAGCTAAACGGCTTGTATTCTTGGAGTGGAGTAAAGGCTATGAcatgatggggaaaaaaaaagattgcattgGTCTTAAAAGCCTAGAATCTAGCACAACAATTTAGAGAAGTTTATGCCAAACACCTTTCCATTTCTTTAGCATGGTAAGAATTCAAGCaacaatataaatgaaaatattcctATTACTGCTTTGGTACAAATAATTcagacaatgaaaaacaaaactaggcTGTAACAATGGATCTCTGCCAGAATCCAAGTGAAGCACAGTTCAAAGCCTTTAGTGTTttgggttataaaaataaaataaaaaaaataaagttcagtaATGGGTTAGAAAAGTAACTGATTATCTAAccgtgtaaaaacaaaaacattaaaaaagaaaagccattcTGCAGGACTGAGACATTGATTATTGCGAACACCAGATGGCAAAAAAAGCTTAACCGGATtagaactgaactgaatcagcatatggtctttaaaaaaaaaacaatacaaaacttgaacaccttaattaaaaaacaaatatggacTTTGGTAAAACTTTTCATAATTGGTGGGGAATTATGGATTTGATAATTTTGCTCACCGTCAAAACATTTAACTTGCAGGACCCCTGTATCCAGCTTGAATAGAACAGATAACACTAATTTCTGCAGAATGTGAATGTTGAAAGGACTAAGGAATTATGCAAGGTTAAACACTTGATTTTGAAATGAGTCAAACCGAGGCATTCAGCAAACAAATGACATCAGGGTTCAATCTTGGTGGCCCAGTTCCTCAATATGGAAAAGGACAAATTGgcctattttaaacaaaaacctttCCTTTTCATACATGGTCATCATTTTAATGCACACAGCTGTGTACAGGTACTGATCAAGTTTACCGTTGGCAAAACCATAAGTAAATAAAAGGTAATCTTCCTGACTAGATGCTtatgttaaaggaaaaaaaggtcAGAAATGCCAAGAGCACTATCAGTGAGCCAACCAGCTGCATTTTTAACTGAACCCTGAGTACCCCAACGTAATGAAAGATCTGTGGTTCAATTTCACAATCTCTCATGTGGCTTTTCAACAGGATCTTAAAATGGGTATGTTGTTTAGCAGAGGTATTTTTAAGCTTACACATTAAAATCTGGAAAATCAGAGTCAGTTGTCGGCATCAGATGGTTTAGTATCTTGCAGACTTATTTTGCTACTTCTTTCCATTCATTACAAAGTAAGGATCTTCATCTTTGGTCTTCGCTTCAGGAATCTTTCTTCCCCGAGGAGCAATCCTAGTAGAAGAAACGGGGGTCTTTGTATTTGAAAGGGGATTTTTTGTGGTGGGGGCTTGAGCTTTACCAGATTTCTGCGAAGCCTTCACAGGAGCCTGCATCTGGCTTGCTGGCTGTGCTCTGCAGGCTGAAATTTCGGGAGTTTTGGCTGTTTGGGAAATCTTGACAACAGACAAGGGACACCTCATTGTGCTTGTGGAAGACGCAGGAGCGCTTTTTGAagttttggtattttttgcAATTGTCCtagaaggagggagaggaggttGGAGTTTGATTTGTGAGGTTTTACGGCCCGTATCAGTCCCATGGATCAGTTTAGCTGTACGTTTACTATTAGCCTCCAATGCAGGGGGGTCTTTCTTGGAGTGCGGAGTCATGTGGCCTATAGTGGGAGACGGTCTTGGACTCCAACTGCTCTTGGGGGATGGAGTCACCGGTTTGACTGGGGTTCGGACTCTAAGTGAAGGGGCATTCTGTTCCAGCGTTTTGACTCCTTGAGTGTTGAGCCGAAGGCTTGCTGCAGGAGAACCAGGGCGCCTCTGGGAAAGGCGTTTTTTCTGAGGACACACCAGCGttgcagcaggagcaggagatTTCCGGGGCTGCTCTGCTGCCTTTTTAGTAATCACTCTCTGAATGGATGCAAATGAACCAATCGGCTCCGAACAAACCGATAACGAGGAAGGTGTCGGACAGCATCTGGTCAGCGAGGGAGTGAGTTTAGAAGACTTGGAAGACGGCTCGGAGAAAACGGACGGGCTCCTTGCCAAGGGGGGGGCACAACGCAAGGAGGGATTTAGCCGGGACACCACTGGAGAATTCGTCAGGGGCGACTGAGGGCGTCTAGATTTGTTCTCTAGACTTTTAGTCAGTGTTAAGGGGGTCTTGGGGGAAGGTCGAGAGCTTTTTGCTTTTTGGAGTTGGCCTGCAGCTAACATGGAGGTCAACGGAGACGTCTTGGCGGGAATCTGGTGCTTTTTTACCAGTCGAGTAGTGCTGGTAGTAGACTGAGCAGCCATTGCTGACGTGGGAGCTCGGTTTGTCGTGAGCTTGGGGACTGGGGAAGGAGACTTGGGTTTGGAGGGGGCGGAGGGCAAATGCACCGCCGAGAAAGGGTTCATGGCAGGAGGGTGAGGAGACCGGCCAGGTGAAGCTGGGATATTGAGCAGAGGGTTAGACACTCCCTTCTGAAAGGCCAGGATCTTCTGCTCAAGCATGCTGAACTGTAGCACTCGGCAGGGGTCGTACTTCAGCAAGAAACCCTGAAGCGTGTCCCAGCCGCCGCCAACGCGCACCATCACATGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48821 lncRNA upstream 81680 4949240 ~ 4955867 (+) True G39186
TU48563 lncRNA upstream 519916 4517136 ~ 4517631 (+) True G38964
TU48551 lncRNA upstream 663973 4370313 ~ 4373574 (+) False G38954
TU48518 lncRNA upstream 785953 4243999 ~ 4251594 (+) True AMCG00012681
TU48469 lncRNA upstream 1060930 3974365 ~ 3976617 (+) True G38886
TU48966 lncRNA downstream 362707 5436833 ~ 5437162 (+) True G39279
TU49015 lncRNA downstream 573648 5647774 ~ 5648107 (+) True G39321
TU49089 lncRNA downstream 848488 5922614 ~ 5923023 (+) True G39382
TU49104 lncRNA downstream 979022 6053148 ~ 6056572 (+) True AMCG00012734
TU49169 lncRNA downstream 1210808 6284934 ~ 6287936 (+) True G39445
AMCG00012702 mRNA upstream 133964 4895052 ~ 4903583 (+) True AMCG00012702
AMCG00012696 mRNA upstream 171780 4860726 ~ 4865767 (+) True AMCG00012696
AMCG00012701 mRNA upstream 276518 4757241 ~ 4761029 (+) True AMCG00012701
AMCG00012698 mRNA upstream 289243 4721259 ~ 4748304 (+) True AMCG00012698
AMCG00012703 mRNA upstream 352123 4677618 ~ 4685424 (+) True AMCG00012703
AMCG00012726 mRNA downstream 108176 5182302 ~ 5189320 (+) True AMCG00012726
AMCG00012724 mRNA downstream 161040 5235166 ~ 5243203 (+) True AMCG00012724
AMCG00012727 mRNA downstream 190147 5264273 ~ 5278114 (+) True AMCG00012727
AMCG00012719 mRNA downstream 230935 5305061 ~ 5312518 (+) True AMCG00012719
AMCG00012733 mRNA downstream 433543 5507669 ~ 5508001 (+) True AMCG00012733
TU48550 other upstream 663973 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 4212839 820524 ~ 824708 (+) False AMCG00012639
TU48986 other downstream 478291 5552417 ~ 5552767 (+) True G39297
TU49057 other downstream 733720 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 1443282 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 2651362 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 2761220 7835346 ~ 7836214 (+) True G39709

Expression Profile