RNA id: TU48887


Basic Information

Item Value
RNA id TU48887
length 555
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G39231
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5206604 ~ 5209859 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaatttccattgacAACAGTATATAGAGAAATTTAAGAACTCAaaaggtaaaattaaataaaaaggaagaaaCTCCTTCGTCTTAGACAAATCTGCACAGACGACTGACGTAGCTGCAGAAGAACACACACCCTTTCCTCAACATAATTGGTGGCCATAATGCTTCCCAGTAATGGCAGTATCTTACATCtagtgtttttgaaatgtgaaatcaaCTCTGATTTGGTGCCTAAGGGAGTTTCTGTCATTGTGCTGTGCTGCCGCCTGCTGTTAGGACTCTGGAACTGGCTGGCTGGGCGCACCACTCCTCGTCCGTAGCTGAGACTGAGCAATGTCTGCCAAAGCACTCTGTATCTTCTCCAGTAACATGTCCCCTCTGTACACCACCTCTTCCAGACGGGCAGCCGCATCGTggttctcctcctccagctgccgCAAGCTTGCAgccttTTGCAAGGCTGCTGTAGACTCTTCACTTGGAAGGGAATCAATCAGCACATCAACGTCTTTCGCAGTCCGTGCAATTAAGGCAGCAAACAGCTGGGCATATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48828 lncRNA downstream 199997 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA downstream 199997 5006135 ~ 5006607 (-) False G39189
TU48809 lncRNA downstream 275851 4929788 ~ 4930753 (-) True G39175
TU48808 lncRNA downstream 290010 4914003 ~ 4916594 (-) True G39174
TU48782 lncRNA downstream 420076 4785694 ~ 4786528 (-) True G39160
TU48922 lncRNA upstream 10912 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA upstream 24303 5234162 ~ 5250471 (-) True G39246
TU48968 lncRNA upstream 178334 5388193 ~ 5408760 (-) True G39281
TU48984 lncRNA upstream 335975 5545834 ~ 5546069 (-) True G39295
TU49068 lncRNA upstream 568431 5778290 ~ 5812036 (-) True G39371
AMCG00012710 mRNA downstream 3439 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012707 mRNA downstream 35382 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012708 mRNA downstream 84098 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012709 mRNA downstream 112376 5072885 ~ 5094228 (-) True AMCG00012709
AMCG00012704 mRNA downstream 200907 4996564 ~ 5005697 (-) True AMCG00012704
AMCG00012711 mRNA upstream 78169 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012712 mRNA upstream 202347 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012713 mRNA upstream 214842 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012714 mRNA upstream 424606 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012716 mRNA upstream 582179 5792038 ~ 5805393 (-) True AMCG00012716
TU47984 other downstream 3022441 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3429383 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4667013 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1245862 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3902582 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 7030537 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7905034 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12670366 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile