RNA id: TU48922


Basic Information

Item Value
RNA id TU48922
length 2404
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G39245
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5220771 ~ 5282686 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aCGGCTTTGAGAAATGCACCATCTCAGTCACAGTCGTCCtgtcaacagcagcagcaacaatgTTACAATAAAGGTTTAAAGTAAGTGCTTcattatgggaaaaaaaaaataataataaaaaaatcaagggGCCAGCGAGGACTGGCCTGCCTTTGTATGGACTCCACTTCTTTCAGCTTCTTGTGGGTCTTTGGAAAACTGGCCAGATTGATGGAGGCTATAACAACAAAGCGATTACTAAGGGACAAAACACACTGGTCTGGCTACAAATAAACAGGGTctacgtaaaaaaaaaaaaaaaaaaaaatacaggaacGGGATTCTTAAATTGAACCACTATAAAATCTGTTGTACAGCACACCAATATCCATATATTTCTTTTTGTATGGGCTGGTTTTGGCCTATATTCTTCACATGATATCCTAAAACACAATTTGATAAGGCAAATTATCCATAAGTTTccataattagaaaaaaaaaagaaaaaaccaaACCCCCAcattttgagaaagaaaaaaaaagtttaaaatgctaCATGCAAAGAttaataactaaaaacaaatgcaatacaaatacagattatattaataaaacagttcCAGGCTAATGTTtgctacttaaaaaaaaaaaattataataataatctaaaattaAAGCACCTTACTTACAGCACTGCACTCTccccaaaatgaaaaacatattcgcATTGAGGACCTTCTCATCACAATCCAGAGCACATCCATTTACAGTACgtcaataaaaaatgaaatctgctCTCTCATGGGCAACTTCCTATAGTTATGGCACATTCAGACTGCAGATCTGATTTCACTATTTGTGTTGCAAAAGGACAATTATTATGTGATTTCTCTTAAGAGAGTTTTCCTCCCAATCTATATGATAATCAGTCACACACAAGTAGCTGTCTTGGGTCTTTGTGTCATTTCAAGTTgccattaaaaattaaataaatatagaaccACAATTTGCCtcttgaaattatattattccACAGGCATCGGATACTGGTGAAATAATGAATATCCAAGAAACAGAACGTTTGGCTCAGTCCTTGGCTGGTCTTTTTCAGTACTacatattcacttttttttgtccTCCGTGGGTTTTGTGCGCATGTGCTTGTGCTAAATTCACAACTTGGAAAAGAATAAAAGTATTCCAGCCTAGTCCTGCACCCTTCTAGGATTCTTGTAAACTGGTGCTTCAACCTTCAGCTGTAATCTACACAGAAATGTAGCAAGGCACATCTGAAATATAGGCAGTCTTTCATTTggtttgttgcttttgttttagaaGCCTTGTGCCAGAGGGCCCATGAAATTATGGGCCTCAATTATTTACTGTAGTGCAGTTTCCACATATTTACCATGATCTTTTCCAGAACAGAGCAGCTGAAATTTAAAAGCAACGTCAGTGCCACATGGAAAAGATTGGGAAAAAAATTCTCATCTTCCAAAATACAACAGGAAGAAGTGCAACTGACCTTCCAGGAATGATGGCTTTGAAGGAATGTACTAGAGACCCGACTATGATTACATCACCATAATGCACTGTTAACATGTAGAATTTCATTCAGTTTCACTTACACAATGCAATGCTCTCCACGAATCACAAGCCTGGGTCGTACTTCCAAGATGAAAGACTCATGGAGGTCCACATAGAAAAGTACGTTAACTCAGAAATTGATTTGTTCATAGTTTCTAACAGCACTATTCTCTTCTCACATTAAATGTTACCTCTGCGTGAGGCATTGAGGAATTTGCTCCAAAGTGTACAAACACAAAGGAAAGACTGTCATGCTATCTGCCAGATTAGCTCCTACAAGCTGAAGAATACTGACCAAAAGGCAAAAGAAAACCAACACCTGCTCACTAGCCTTTTAGCCCAGTTCTGCTcctaaaaaggaaaacattataCCTATAATGCCTCTTAAATAATCACAGTGTGtttcagaatataaataaagtcAAAAATGGATAGGGAAGGTGAATCTTTGTGGGTACTCCTGGCTGGAAAAGTGCAGGTTACTAGAGCCAAGAAAGCACCTTGCTAGAAGATGGAGCCAGATCTGTTTGCTCTCAACGGCCAGCACACCCAACTAGAATATACAGTACAAAGTCCAAAACTCTACAACCTCCTTCtgcaaaataagaataaataatgaaaataaaaaagacctaTAAATATGCACTGTTCAAAAAATGTCTAGATGTAAGACAACTTGTAACCCATTTGTAAGTTAGACCCAGACCTGCAGTACGAATGTATGCAAAACTTCCAAGTTCTtcacagatatatatacactcacctaaaggatgattaggaacaccatactaatactgtgttNNNNNccctttcgccttcagaactgccttaattctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48887 lncRNA downstream 10912 5206604 ~ 5209859 (-) True G39231
TU48828 lncRNA downstream 214164 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA downstream 214164 5006135 ~ 5006607 (-) False G39189
TU48809 lncRNA downstream 290018 4929788 ~ 4930753 (-) True G39175
TU48808 lncRNA downstream 304177 4914003 ~ 4916594 (-) True G39174
TU48968 lncRNA upstream 105507 5388193 ~ 5408760 (-) True G39281
TU48984 lncRNA upstream 263148 5545834 ~ 5546069 (-) True G39295
TU49068 lncRNA upstream 495604 5778290 ~ 5812036 (-) True G39371
TU49079 lncRNA upstream 533786 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA upstream 535500 5818186 ~ 5895114 (-) False G39377
AMCG00012710 mRNA downstream 17606 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012707 mRNA downstream 49549 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012708 mRNA downstream 98265 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012709 mRNA downstream 126543 5072885 ~ 5094228 (-) True AMCG00012709
AMCG00012704 mRNA downstream 215074 4996564 ~ 5005697 (-) True AMCG00012704
AMCG00012711 mRNA upstream 5342 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012712 mRNA upstream 129520 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012713 mRNA upstream 142015 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012714 mRNA upstream 351779 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012716 mRNA upstream 509352 5792038 ~ 5805393 (-) True AMCG00012716
TU47984 other downstream 3036608 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3443550 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4681180 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1173035 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3829755 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6957710 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7832207 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12597539 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile