RNA id: TU48968


Basic Information

Item Value
RNA id TU48968
length 640
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G39281
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5388193 ~ 5408760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTgctttaaaatttgtatttaagtAAGGTTTTGAATGGCAAGCCAAGTTATAATTTAGATTTatctttaattgcatttaaatatagcTTTAAGAAAGATCTCTAGAAATAACGTCCTGTATATTTCGAGATACCTAAAAATCATTTTCAGATAACTGtaaatgatttcctgttcatttacagatatctgtaGATCTATTAAAGATATCTGAATATTACATCCTGtgtgttggctgagattatcacttcctgtttactcattcagttacatagaaattaatgataAGAAAGTGATAATCTCAGGCTACACACAGGAAGTAATTttcagatatcttcaaatgatttgCACATATCTCAATGTAccataaaacttcaattaaatgcccccggcgtttattccaaataactgcaagaagccccggcATCAATTAGAGACCGGCGTTTGTATTGAACATTCCTAAATAAAGATACTGcagactcatgcagggtaagaagagcctggaaacattgcttcattgtagaagtaggctaataagccaggcttttattttaattttttttatgtatttattatttgtaaaacattgcaaaatacactcacctaaaggattattaggaacaccatactaatactgtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48922 lncRNA downstream 105507 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA downstream 137722 5234162 ~ 5250471 (-) True G39246
TU48887 lncRNA downstream 178334 5206604 ~ 5209859 (-) True G39231
TU48828 lncRNA downstream 381586 4931244 ~ 5006607 (-) True G39189
TU48827 lncRNA downstream 381586 5006135 ~ 5006607 (-) False G39189
TU48984 lncRNA upstream 137074 5545834 ~ 5546069 (-) True G39295
TU49068 lncRNA upstream 369530 5778290 ~ 5812036 (-) True G39371
TU49079 lncRNA upstream 407712 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA upstream 409426 5818186 ~ 5895114 (-) False G39377
TU49135 lncRNA upstream 652230 6060990 ~ 6063817 (-) True AMCG00012732
AMCG00012711 mRNA downstream 84300 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012710 mRNA downstream 185028 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012707 mRNA downstream 216971 5153275 ~ 5171222 (-) True AMCG00012707
AMCG00012708 mRNA downstream 265687 5097321 ~ 5122506 (-) True AMCG00012708
AMCG00012709 mRNA downstream 293965 5072885 ~ 5094228 (-) True AMCG00012709
AMCG00012712 mRNA upstream 3446 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012713 mRNA upstream 15941 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012714 mRNA upstream 225705 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012716 mRNA upstream 383278 5792038 ~ 5805393 (-) True AMCG00012716
AMCG00012715 mRNA upstream 421858 5830618 ~ 5831514 (-) True AMCG00012715
TU47984 other downstream 3204030 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 3610972 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 4848602 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 1046961 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3703681 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6831636 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7706133 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12471465 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile