RNA id: TU49068


Basic Information

Item Value
RNA id TU49068
length 1190
lncRNA type sense_over
GC content 0.33
exon number 3
gene id G39371
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5778290 ~ 5812036 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attaaaaaaaaaaaaaaagacatcatGCAGGATTATTTTGTACTGTGAATCTTTTCTTTCCCCACTCAAAACACCAGAGTGCATACTGTAGATCAGAGACACTATACAGATATTTATTGCCAAGTTGTGGATAtaagtttttttaaacattcgTACCAAGTACATGCTGTAAGTAATCCAAGTTAGAATGTTTAATTATAAGCCAATTAGAACATTGTCTGAGAAAGCACTAATTCCCTTTATGTGCAATCCAATTATAGGTTTATCAAAACTTTCCATTAAACATCATTAAATGTTAACACCAAAATCctttattttgtaagtaaatCTCGAATCATCTTTGCAGCAGTGTTGTAAAAGGGTAACTGAAGATACTGAAAGACAAAGGGCAGACTGGTtcaattgaaaaacaatgtaattttaacATGCAATATTCCAGCAAAGGTTTTGGAAAATGATATTCTAAATCTAAAAAGTTTGACGTGACTAACCAGGGGAGGGCTAGTTATGCGATTTTGTTATGGGAAATGTCTGTTCTACACTTTGTAGAACACAATTTTACACAAGTTTTACTGTGATTTGTGTGAGGGAAGTAAAATAATCTCAATTCATGACCTACCAGGAAGCGATAATTAAAGACACCTACCCAAGATTAATTACTGTACCATTTAGAACACTTtaggatatttttttatcaggGTGTGGAGAGATTTAAAAGGATGTCTCTTCCcacaatctttaaaaacaaacaaaaacctcacATTTAATCAATTACCATATACTTAGCGGGAACTACTGAACATTCAATCAATGGATTCTGTACCCGCTATCCCCCTGCCCCTTCCTTAAACATGTTTTCTGCTTAGTAGTGAACATTTTGTGACTGACTTCCCATTCTGATCAACATCTTAATTCCTGAAGAAAATTGAAGCTTCTCAGTGCACATAAAGTTCATAAGAGCAGCAGTTTTCTAATAAGCAGTGCAGTTTTCTGCATTTCCAGAGAATACAAATTATTCCCATGATTCAAGATGCCCCAAAGAGCAAGGTACTGGCTTCTGCAAAACAGAGCCATATACCTCCCGGTGTGTTGCTAAGTAGTTTTACAGTAGCTGTAGTCTCTCTCAcaattttttaaagatgtattctattgaaaataaatgttaataaaaataaataaataaataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48984 lncRNA downstream 232221 5545834 ~ 5546069 (-) True G39295
TU48968 lncRNA downstream 369530 5388193 ~ 5408760 (-) True G39281
TU48922 lncRNA downstream 495604 5220771 ~ 5282686 (-) True G39245
TU48923 lncRNA downstream 527819 5234162 ~ 5250471 (-) True G39246
TU48887 lncRNA downstream 568431 5206604 ~ 5209859 (-) True G39231
TU49079 lncRNA upstream 4436 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA upstream 6150 5818186 ~ 5895114 (-) False G39377
TU49135 lncRNA upstream 248954 6060990 ~ 6063817 (-) True AMCG00012732
TU49166 lncRNA upstream 456199 6268235 ~ 6268938 (-) True G39443
TU49191 lncRNA upstream 473419 6285455 ~ 6287935 (-) True G39462
AMCG00012714 mRNA downstream 138758 5634465 ~ 5639532 (-) True AMCG00012714
AMCG00012713 mRNA downstream 341309 5424701 ~ 5436981 (-) True AMCG00012713
AMCG00012712 mRNA downstream 363950 5412206 ~ 5414340 (-) True AMCG00012712
AMCG00012711 mRNA downstream 474397 5288028 ~ 5303893 (-) True AMCG00012711
AMCG00012710 mRNA downstream 575125 5190953 ~ 5203165 (-) True AMCG00012710
AMCG00012715 mRNA upstream 18582 5830618 ~ 5831514 (-) True AMCG00012715
AMCG00012730 mRNA upstream 178067 5990103 ~ 5997112 (-) True AMCG00012730
AMCG00012732 mRNA upstream 240328 6052364 ~ 6063605 (-) False AMCG00012732
AMCG00012731 mRNA upstream 259887 6071923 ~ 6086826 (-) True AMCG00012731
AMCG00012735 mRNA upstream 422640 6234676 ~ 6239419 (-) True AMCG00012735
TU47984 other downstream 3594127 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4001069 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5238699 523747 ~ 539591 (-) True AMCG00012628
TU49217 other upstream 643685 6455721 ~ 6456178 (-) True G39487
TU49940 other upstream 3300405 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 6428360 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 7302857 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 12068189 17880225 ~ 17899426 (-) False AMCG00013038

Expression Profile