RNA id: TU49169


Basic Information

Item Value
RNA id TU49169
length 3003
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G39445
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6284934 ~ 6287936 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAACATTTGTGTGAATAATCTAAACTGAATGAATGCTGTTCGCATGACAAATATCCAAGCACATTGAAACGaacttgataaaaaaaaaaaaaaagaaatctctTGCAGTGCCATCTTGTGGCGAAGAAAGGGAAGCTTTTGGTCTCAGCCTAGCTCCCAAACAGCAGAATTTCCAGGTTTTGTAAGGAAGGACACAAGGGTTATCTGAACAGAACAGGAGCCACCATCAACACCTCTTTACTCACAATCAGAAAACTGCTTGTTGGGATTGTTTCAGGGACATGCTTTGAAGTGTTTGTACAATGCATCTGGTCAACGTGAGctgttaaatatgaaagtctgATAAAAAGTACCCCcatcttcatttgaaacattgttATACATTTAGTTGAATAGATATTGTTAATTGAACTGTACTTATCTTCACAGAGTTTTGTTGTGCAGTTACTTTAAGAGAAAACTGAAGACACACATGAAATCAAAACAGCCCACTGAGTGCTACACGAGATTGTGTTTTTccccacattttttttattaatagaattaaaaaacatgaaacagtcATGTGTGAATAACTGCCTGCTGAAACAATTCAACTTTAAATAATTCTATacatagcatttaaaaaatgaacagcaGGAAATGATTTGCATTGATAAACAGGCAACTCCTTGAGCTCCCACAGCAGTcgacccctgacctctgacctccgaCCCTGCCACCATCTTCCCACACTGTCCATACAGTCCCAGTTAAGGGCATGCTTTAAAACCTTCTCCGAGGTCCTGCCAGCGTTCAGGTCTCCTTACAGCAAACACAAAGAGGCTGCCAACAAAACTAAACGTGCGTTTGTTCATGACGCACATTCAAAAGCAGAAAACGAGAGCAGGGCTTAAAAATACAGCAAGAACCAGCCATAGGACTGGACAAAATCAAGAGGTTGACCCATTCGCAAATCATACACTCCAATTCCAGTGTGGATCATTCCTTTTCACTTCGTGCAAACCTACCACAAAAGTACCATGTTTACAAATTGCACCAGGCAGATTGGTTGACATTCTGATTCTGTCTGACCCTTAGTTGGTCTGCAGAACAGCtgtgtcccccccaccccatctccTTCATGTTAAAAACAGCTGACATCCTCcccaaggaagaaaaaataactccACAAAGAAGTGATGAAATACCTGTATTAACAAAGGACatgtatgttaaatgtattcaccagtatgaattacaattacataaaattTCTTAATTTTTGGTACAAAGTGAATGTATTGGATTTATTTCTTAGCCCAAGCAGAACTGTAAATGCAGTGGACTTTTAGCAAGACCTCTTAGGTCACACTACTAACCAAATGTAGAGAAAACCCCACCTGTTAGCCTTCCATGAAAAAACTAAGATGATAAACCTATTGAgcaaatttatttaaatcactttttttaacCTACCAAAATAAATGCCCCATTGCCTTAAGATGATACCAGGGCCTAGACCACATCAACACTGACTTACCAACGAATTTTGAATGGCAAATGTACTTCTAAATAAAAATTGGGTGCACAAGAAATGTGGCTtctaatcaataaatacaagtttgtaTTTTACGATTTGCAAGCAGGgtgacattttgatttggtttaggcCTCAGGCACAATGCAGGGCAAGAGTCAAGACCAGtgagtacaaaacaaaaacaaagtacaaaacctgattgtgagagagagaacatttcCTTGGAACTCACTGTGGCACGTTTAAAGTTGCACTCAAAAGTAACGCTACCCCCGCAGAAAAAGATTTATTTACAGCAGCTTTTTTTTGCACAATGTtacattaatagaaaaaaaaaaaaaaaacattgaaagaaaaaaataacaaattatttgtCGCATTAAGGTAAAAACCACACTAACCACTATTCCAAATTTTgctcttaaaatatttacaaacctTTTCGTGTTTTGCTGTCAATGTGATAGCGGCCACTCTATTATGGTGTGCTATTAGGGATTAGTGATGTAAAACTAtattattttgccttttcagAAAGGGCTGAATTAAGCAGAAGGTAGTCTTCCGGTCAGTGCTGTATTCATAAGCCTTGGGCAGCATGCGTGACCCTCATGTTACCCAGCATTCCCTCTCGTGAACAGGAGACGAGGACAAGAAATCTCCCCTGCGGCTGGAGCCCTGCCAAATATTCACAGTTAAAAAACATGCGTGAATAGGTAAAATACTGGGGTGAGCAGTCAGtgatttcaaaatgtcacatattttaagTTCAGTTTAAGAAACCCCTGGAGATTGGTATCTGAAAGAGAGGTGATAGTCCTGGCCCTGTGCTGTACTCGCTGATAAAGAACGCATTTTACACCTCTAGCTAAAGTTAAATTTTctgttgtattacatttaatttgcatattgaATGTGCCGTGTTCAATGGACGAACGCACATCACATTCCTGCATggcaattgttttaaatgtagcttTTATTACAAGGTCAACCTTAGGTGACGCCTTCCTCACTTCCTGCAATTTCTTGCTTTGGGCTGTAATGCACAAATTGGGCAATCCCAAACGTGATTTTCCTGTAACTGCTCATGTCCACATTTTTTGTCGCTCAGCCAAGTGTCGTGTAAGATGGAGTTGCAAATGGCTGTCGAACTGAGGTAGTTTTTTTAATCCTGACTATTGCTGAATCCAAGGTTGTGACTCAAACAGGAGGCCAGACAATGTcgtattttacaaaataaatataaagtccGACTTGGTTGGATTATTTTATCGTTTGAATGGTCTGATGGAGCTTAAAGCTTGATAAGGTCATTAGAATACAGGTTTAACAGGGACATAAGACTCCACTCTGCTCCTATAATCAAGGTATCAAATATGGATCCGTTCACAGCACTTTTAAAAGACTCAGGGTTCTAATCTGGAACTCCAATTCTTATATCTGAGCCCCAATGACGGCCTACCTTCCAAGTTCNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49104 lncRNA upstream 228362 6053148 ~ 6056572 (+) True AMCG00012734
TU49089 lncRNA upstream 361911 5922614 ~ 5923023 (+) True G39382
TU49015 lncRNA upstream 636827 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 847772 5436833 ~ 5437162 (+) True G39279
TU48836 lncRNA upstream 1210808 5037547 ~ 5074126 (+) True G39193
TU49225 lncRNA downstream 224712 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 474029 6761965 ~ 6762278 (+) True G39538
TU49318 lncRNA downstream 610061 6897997 ~ 6898230 (+) True G39560
TU49358 lncRNA downstream 925809 7213745 ~ 7218459 (+) True G39586
TU49424 lncRNA downstream 1072884 7360820 ~ 7362361 (+) False AMCG00012763
AMCG00012739 mRNA upstream 2155 6280300 ~ 6282779 (+) True AMCG00012739
AMCG00012738 mRNA upstream 15491 6265742 ~ 6269443 (+) True AMCG00012738
AMCG00012740 mRNA upstream 20140 6243907 ~ 6264794 (+) True AMCG00012740
AMCG00012741 mRNA upstream 53644 6193260 ~ 6231290 (+) True AMCG00012741
AMCG00012737 mRNA upstream 183324 6100581 ~ 6101610 (+) True AMCG00012737
AMCG00012750 mRNA downstream 95869 6383805 ~ 6412746 (+) True AMCG00012750
AMCG00012749 mRNA downstream 150107 6438043 ~ 6453810 (+) True AMCG00012749
AMCG00012748 mRNA downstream 188313 6476249 ~ 6517983 (+) True AMCG00012748
AMCG00012747 mRNA downstream 257296 6545232 ~ 6579959 (+) True AMCG00012747
AMCG00012746 mRNA downstream 338058 6625994 ~ 6627816 (+) True AMCG00012746
TU49057 other upstream 461614 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 732167 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 1911360 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 5460226 820524 ~ 824708 (+) False AMCG00012639
TU49223 other downstream 229472 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 1437552 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 1547410 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 2824524 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 4148971 10436907 ~ 10444447 (+) True G40224

Expression Profile