RNA id: TU49217


Basic Information

Item Value
RNA id TU49217
length 458
RNA type TUCP
GC content 0.42
exon number 1
gene id G39487
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6455721 ~ 6456178 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCATCACAGCATCTGCAGCTGACCCCTAGCACTACAACCACTATGCCAATAGATTGGTTTAGTCTCATAGAAACAGGCTACTCAGCATCGATTTATCCCTCTGACTCACTTGGCTCTCAAACCGAAACTTTGGTTTATACAACAAAACTGGATTTCCTATCCACCCATGGACAATTGGTGAACACTCACGGATTTCTCATCCCCctgtcatcatcatcagatACAGAGGATTCTcaaagttattattttccattggcAGAGCATTCCTCTCTGGTTTCTCCTGACAAACTCCTAACAATTTATCCTACTCTAACATCAGTCACTTCAGTGCCTGAAAgtccaacaataataatattcactAGTATGTTGTCCTTTCCCTTTCTGACATCCTCAGAATCAGAGAACAATTCATCTTCATTGCGATCTTCCAGTGCCGGCCAGGAGCAGCAAATATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49191 lncRNA downstream 167786 6285455 ~ 6287935 (-) True G39462
TU49166 lncRNA downstream 186783 6268235 ~ 6268938 (-) True G39443
TU49135 lncRNA downstream 391904 6060990 ~ 6063817 (-) True AMCG00012732
TU49079 lncRNA downstream 560607 5816472 ~ 5895114 (-) True G39377
TU49078 lncRNA downstream 560607 5818186 ~ 5895114 (-) False G39377
TU49269 lncRNA upstream 182329 6638507 ~ 6695924 (-) False AMCG00012751
TU49302 lncRNA upstream 316790 6772968 ~ 6847396 (-) True G39546
TU49313 lncRNA upstream 330278 6786456 ~ 6795733 (-) True G39556
TU49319 lncRNA upstream 441809 6897987 ~ 6898237 (-) True G39561
TU49351 lncRNA upstream 694439 7150617 ~ 7150823 (-) True G39580
AMCG00012744 mRNA downstream 20090 6412731 ~ 6435631 (-) True AMCG00012744
AMCG00012743 mRNA downstream 77467 6362449 ~ 6378254 (-) True AMCG00012743
AMCG00012742 mRNA downstream 128646 6289631 ~ 6327075 (-) True AMCG00012742
AMCG00012736 mRNA downstream 197797 6256830 ~ 6257924 (-) True AMCG00012736
AMCG00012735 mRNA downstream 216302 6234676 ~ 6239419 (-) True AMCG00012735
AMCG00012752 mRNA upstream 151016 6607194 ~ 6619758 (-) True AMCG00012752
AMCG00012751 mRNA upstream 182302 6638480 ~ 6650822 (-) True AMCG00012751
AMCG00012757 mRNA upstream 359630 6815808 ~ 6823765 (-) True AMCG00012757
AMCG00012758 mRNA upstream 472352 6928530 ~ 6981212 (-) True AMCG00012758
AMCG00012759 mRNA upstream 559927 7016105 ~ 7024518 (-) True AMCG00012759
TU47984 other downstream 4271558 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 4678500 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 5916130 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 2656263 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 5784218 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 6658715 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 11424047 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 11497885 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile