RNA id: TU49358


Basic Information

Item Value
RNA id TU49358
length 3196
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G39586
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7213745 ~ 7218459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATCAGAAGTGTTTCCCTTTAATAAActacacaacaaaatacatattgagAAGAATGTACAAAGACACATATGggtctaatatatattttattaatgggaTTAACATACTAGGAACATATCATTTTACTGTGTTCAACAGAtcacacaaaatataaactatagaaatataaatctCTACAGCATACATCGCCCATTATTTGTGCTTAGAAACAACATGACAAACGCAGATCAAGGCAGCAGGGCTTTCACTGGCGACCAATATAGACCTAAATgttatttctattaaatatttagaataattgtcataatttatcatttttaagaatctttaatatatttgcatattgtaTCCTTAGAAACATTTGATTCTGCTGCcagcaagttaaaaaaaatcaaaaaatgaatataGTGTTTGTGCTGAAGTAGAAGTATATAAATCAAGTTAGAAGTGTTCTTTGTAAAGAGGCCTCCACCAAAGTGAATTTAGTATATCATGAAACGATGTTATAGTTAAATAGCCTTCATGTGGATCAGAGACTGCCTGTGATTTCATTAAGTGCTTCTCGCTGATGTAAAGATGACAATTGAACGGTTTGTATTCTTGCCACAACACCCGCGCAAACCATTCACATCAGTCTGTGCCACTGTTCATACTCAAAAATGCAGAAGTCTTTCTATAATTCAACTAAATTGCAAACAATCGGATAATCTGATTACAGTAGGCGGTTTGTGGTCAATAAAAGTAACAAACATTGCGTTCCTAATTGCAAGTGTTACCGTTTGAGTTAACTTATCTAACCTTTATTTGCTCATAATAAAGTTATGCCTGCATGTGTGTGCCTTTTTTCCATGCATTTGCTTATATAATGTTCCCTGCAAATTATATATCATACATAGGAggcattcaaatgtaaaacttgAAAACTTAAAGGTTGAATGAAGCAAATACAGTAGGAAATAGGACCTTTTCCCTCCAGTTATTACCTGAGACCAAACAAAGGTGGGTTTATTACCATCAGTGGAATGTTTAATCTGAAGCTAATAAAActataacaaatacagtactaTGCCTGTTGCTTTTTCCTGCTTTGATTCCTAACAGTAGGATAAAACATATGACCTAGCCCTTGTGCAAGAATACCCTGTGAAATTTACCATTGGAagttttcacttttaatttggttaaaataattgtatgaataAATCATGGTTTGCTATAATAAACATGCCTTAGAAATATTTATCGTGGTATATAATTGCATTCCCAGGttacagtgtagtaaagcaGATAAAAGTTATGTTGAACCCATAGGAGACCACTTTAAAACTTTTCCTATTGTAAATGTACCAGGGTAAACTTGCATAACAGACTGGATTAAAATAAGAGGAAATAATACACACATCAAATATTTCACACCAGtaatttaacacacacaaatgcacgtACATGTCTTTTATGAAGACCACATCATAGAATTTCATATGTTTAACATCTCAATTCTATTGTCCATTTCTTATACTTGTTCTAATTATATTGAACTCTTGGTAATTCAATTACATGGTAGTCATCATAAAAGTCTATGGTTTTATCAAGGTCCTttggtaaacaaaaaaaaagtgcacattttaaaaccacaaagaaaatacatctgtCTCTAGGCTCTGGTTGTCTACATATGATACCTGTTATCCTACAGCTATTATTCTAATGAAATGTGCATTCATGTATGAAattctgaaaacatttcagcAGAAACTATTCTTGTTATCAATTTGAAGTTTGGTGCATCTTTCTCCAGACTAAGAATTACTATCAAAGCGCAAAggtattcaaatacatttagtcTAGATATGCAATCGTACAGAAGTTgtagatttattatatattattattattactactattattatttgtattattattttcagcatACTGTAGACATATCTTCAGGAAGATGCATTAGGAAACTGGCAATTTGGCAATTGCTtccatgtgttttgtgttttattattaaactacaCTTTCAACAGATACAACCTTTAACAAGAGTAACAAACTGTGCTTCAGTCTAGACTTTGTGCTTCTGTTTCAGATGAGTCCAGTAAAAAGTGCTTTcatcaatatttcaatattcatGGTTACACTAATTGACTCTAAATGTGAGGCAGTACTGATTCTTCAACAGTGTCTGAAGTGGAAATAAAGGTTGTGTCTGATAGAGGctgtattcataaattatttccCTGGACCCTGTCAGTTTAAACATccctttaaatatgtattttaatattgaactTATCTGCATAACACAATGACAGTACTTTACTGAGAGTATCTATACAGACACAAAACCACAGAGAAGCATTCTGCAGAAACACGTCCAGAGCTACACTGAACTTTATTGCTAACTACGACATTTCATTGACAAGATTAAAAGGCCATATGCAACCATCTCAAGTTCATCTATTGGTGCTCAGGTTCACAGTCAAATGGACTATGACTATATGACTACCAGACTATGTGAATTGAACTGATCAGTTAATTGAACTgatactttacatttttcttgtgcCATTCAGAGAATAATGACAGATATGGCTGAAGAGAAGCAAAGGCTTGGCAACAAATTAGTGATGGATCATTAAGATGTAAGGTGtcctgtaataataattagaaaaggGATTTTAATCTTATATGGATTTCATGTAGTTTTGCAGttttgtgaaggaaaaaaaaacacatactatTTCCATGTGCCAATTTCATTCTGTTAttaattgtctttctttcttgttttttttcattgtttatttggtttccCCATGCTTCACTGGTAATATAATGTTAATCCATTTTTAATAACCCGTTTCATGAACTGTTTCATTTTGAGGAATTGCACATGACCTTCAGGGTACAATTAttgcacacacaaaatgcaGCTACCATCACATTGAGGTAATAACTTATTGTGTTCACACTAAGGATCTACATTAAATCAGTGTTGATTGCCAGTGTTTACAATTGTGCTCTGAATAATTGTGTACACATACTGTGTCACAAGGTCTGAAGAAACCCTCTTTCATCTTCATTACACCAGGTATGCCCAGTCACTCTGTACTCTGCCATATGAATATCGGTGAGCTGTTTCAGTATTCTTGTGGTTAACTTTGGTCCATTTTCCATAGTGGGGATG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49318 lncRNA upstream 315515 6897997 ~ 6898230 (+) True G39560
TU49284 lncRNA upstream 451467 6761965 ~ 6762278 (+) True G39538
TU49225 lncRNA upstream 677352 6512648 ~ 6536393 (+) True G39490
TU49169 lncRNA upstream 925809 6284934 ~ 6287936 (+) True G39445
TU49104 lncRNA upstream 1157173 6053148 ~ 6056572 (+) True AMCG00012734
TU49424 lncRNA downstream 142361 7360820 ~ 7362361 (+) False AMCG00012763
TU49474 lncRNA downstream 490408 7708867 ~ 7713243 (+) True G39668
TU49475 lncRNA downstream 496038 7714497 ~ 7735268 (+) True G39669
TU49569 lncRNA downstream 687798 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 838560 8057019 ~ 8132564 (+) True G39776
AMCG00012756 mRNA upstream 370404 6823862 ~ 6843341 (+) True AMCG00012756
AMCG00012755 mRNA upstream 418016 6783452 ~ 6795729 (+) True AMCG00012755
AMCG00012754 mRNA upstream 432927 6765079 ~ 6780818 (+) True AMCG00012754
AMCG00012753 mRNA upstream 454170 6643345 ~ 6759575 (+) True AMCG00012753
AMCG00012746 mRNA upstream 585929 6625994 ~ 6627816 (+) True AMCG00012746
AMCG00012762 mRNA downstream 28703 7247162 ~ 7279658 (+) True AMCG00012762
AMCG00012761 mRNA downstream 72392 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012763 mRNA downstream 125991 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012767 mRNA downstream 178120 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012768 mRNA downstream 208522 7426981 ~ 7455406 (+) True AMCG00012768
TU49223 other upstream 695824 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 1390425 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 1660978 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 2840171 4370313 ~ 4373574 (+) True G38954
TU47822 other upstream 6389037 822151 ~ 824708 (+) False AMCG00012639
TU49477 other downstream 507029 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 616887 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 1894001 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 3218448 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 3218448 10436907 ~ 10444447 (+) False G40224

Expression Profile