RNA id: TU49474


Basic Information

Item Value
RNA id TU49474
length 3806
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G39668
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7708867 ~ 7713243 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttgttttgtttttttaaatagtttaatttgtaaactCTCCCACCCCAGTACAAATCATGGAGCGACATTCATTTGGTTTTGCTCAAattcacattaattaaatatcataATTCACGGacataaaagaaaatgattagCCAAGGCACAAAGCATAAGAAAGCAAACAATGAATGCAAACAATGAATTTGTCTTTGATGAGAAAATATTACAGTACAAACAATGAAGTAAAACAAGTCAAATAGACAAACAAAATTCACCACTGTGCTCCATCTGAAGAGGTGAAAATCTTGCATTATCTTGTAATTAAACAGTATCACAAAtcttattcattaaaatatgaaggGAAAAATCCTCAGACCTTTAATGCCGTTAGAGTTCTCACTATCAGTTAAAAGCAGTctggtcatttttttttgttccagttttaagaaaatttaaaatgaaaaatgaataatcattcagtaaaacaattaaaacaagacGTCTTCATTACATGCAGAAATTTGTAATTTCTAATATATATGCCATTACATTTCAGCAGCAGATGGGATGAAATCATGGTGTCTTTTCTCCAAAATTGAGTAAagacaagtgaatacaataagcAGGTGTGAATGTTACTCATATTTTAGTGACACTCCTACATGTTCACTACAGTGGGCAAATCAGAGGTATCCTTAACAAGGAGTTTCAAACAGGTGAAAGACTGTAGGaagatttcacatttcacatatGCAGCATAAATTGAACACTTTAAGTTTTCTATGgtaaacatttttatgtttttatgttttctttcatgatttaatttttGAGACCAGGAAAATATGTTGAAGAAAATTTATGCTAACAGAGGATGTATTAGTATGTCAATGGAAATTAGTTCACTGGAGTGGTCAATGGTACAGATTTACATACTGAAGACCAACTCATGTCTGCAGTGAAATGAAAGTGACATCAACATTTCTTCATCTGATTTTCCCTTCATAGATTGTTACTTAATATCCATGAATCAAACTTCCTGATTACTTGTACTTCATATATGTTTAAACAGTGGTCTCTCTCCTGGTCCTGTAGAGCCCCAATACAGTTAGTTGTATAGGTCACCCATTGTTAGTTGTATAAAGCACCAATTACTGAAGAGGGGGACTTTAGTTATCAGTTAAACAACTCACTTTTTCAGTCAATCATTCAGTCCAAATAATCCAAATAATCtctgaattattaaaaatgcttaTTGCAACAGAATTAAAAGTTTAAGTCTTCATAAATTTGTGCTTTAAGGGTGGCCTgtaaaacctgctggactggGTCTGTCCACCGGAGGAGGTGCGAGGGGAACACCCTGCCCATGCCGACTCAGAAATTCTTGCGGTCAATCTTTTCCTGGGTGTCCTTGGAAAGTGCCATCTCCTTCAAGAGCAGCACGTGCTCAGCCATCTCCCGTAttgccccctgccctgctgcaCAGTGACAAGTATATTTCGCCGCTTTCACTGCCACCGAGGGGGCGTCCAGGGGCACACCGCTCACCCCAGCCAGATTCAGACAATCCACGTCAGGCTTGTCATACCAAAATAAGCCACATCCTTCCATGACAGTTGTCGCTCCTTCATGAGCCGCTGCACCTCCTCCTGTTTGTTAGCTACTTTCTGCTTCAACTGACAGCCCAGCTTCTTGGCAATGAGTTTCTGGACGGGGGAGTCGCTAGAAGAGATGAACAGCACCTGGGGAAGACATGACACGGGGAGAATTATAAAAAGGGTCGATTTACTcctaaaataaatcatacaaaacctctagaatgtaattttattagcagattgaAAGGAAACGTTTGTTTTCATGAActaaagaggagaaaaaagtacctaataacaaaattaaaacaattacagcagGGGTAGTCATTtttttgtcagggtccaaatttcttggtcaaggttcaaatgcccctttccaacacacacacacaattctgtgaattagtaatatagcccgttgcttatatttagtacattcatttgacaaagtacaaaaataaaaaaagttgaaatagatgtaaatataagtattaaagtgctttcagaccacttttaattgttgtaatttgttaaagattattgtaggcatatagataaacataaaataaacttttcaagcattttgtgtcttattcgATTCAAGTCTTTACTACTTCTCTTTTCATTGTacactgttcaaaattaatattgcaaaatgagggcaaagatgATTGAGGAATTCAGGgcagggggtctgggggtcctcccccagaagatttggacaattggagacctgaaatgcgcaATTCATTTCGAAGTCGAAAAACTTAggtcaaaatctccatgaaatccatgaaatcaggcagatttggacaaccagcaaaaaaatcacacatcaacagaaattatacatgcaaactagacatggtttctggtgcttatcaatcacagatctatttcagtgggtctctgtgattgaaacaggtgaggatgcaccattttctatttgtgcacctgctagaaatgtgtgtctgcattggaaatcagctgtttccaaccccgatgtaggagtttctaggtgaatacaagctataGCACCGTGCCCTCCCCTGCCTGGTCCTGTGTATGCACTTCTATATTTTGGAGGTGAgattgaaatatgtccacatgtCAAACGATccgcagtttagctgtttatttatagaaatcaggaaaacaaacagaatacctgtgtttttgacGAGTACAAAGTGTATAGAGACGCCCGAACAGGGAATCTGTGCGCAATCAACTCACTAACATGAACACTAGCTCTATAGGATatcccatattaatacgtaacatcctattggctaataaccaggaagtgcagctactaggttccacacaataacaagcactgagtgcaacaaacctccattaacaatacataaaataaaataaaaatcaatcatgataataacttaaataaaattattctcACGGTCCATTAAAAAGCATCTGGTggtccggatttggcccgcgggtcgcctattgactacccctgaaTTACAGGTATAATCAGTAGCTCAGTCTTTGTCAAAGGTAATTATATCTAATAAATGAGAACTTTACTTCATTCTTTAATGCTTCGTTCATTGGCCgagtttctttttatttattttattaatcccTAGCAACAGGTCTAAAACCTACTGCAGTTTAAGATTTCACAATGATTTCAcaatattcatacacacacacgcacatgaaAGAAGaccctaacaaaaacaaatacttcagCTACACCTActcacaaattattttttaatattagtttTCACTAATATTAGTCTCTCAGATAACCCAGCTGTACTAGCGTGACCTGTATCTTCCACCGATAACACTGTTTCTCTCCGCTTGGGAATGCAGAACAATCACACAATGGAGGTCCACCACAGGACTGAACACACAGGGTTACATGTCCTTCCCTCCCCCATCCTGCAGATGTTCTACGAATAAAGGGAATACCTCGACTCCACTATCCTGCAGCAGCTTCACCGCCATAGTGTCTTTGACATTAACAGACAGGATCTCTTCCCCAGTGGTGGACATGTAGAGCTTTCCATCAGTGAGACACCCGTCAAAATTGGTGACAAACAGTTTTACTTGCTCCAGCTTGTCCCGTCCAAAGTATCCATACctGAGAACTCTCTGTTCTGCTATTGGCCAGTCAATATCAACATCAATGTCCACACTGTACTCTGGGAGCATTTCATAGTAGATCATATTCCCAccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49424 lncRNA upstream 346506 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 490408 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 810637 6897997 ~ 6898230 (+) True G39560
TU49284 lncRNA upstream 946589 6761965 ~ 6762278 (+) True G39538
TU49225 lncRNA upstream 1172474 6512648 ~ 6536393 (+) True G39490
TU49475 lncRNA downstream 1254 7714497 ~ 7735268 (+) True G39669
TU49569 lncRNA downstream 193014 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 343776 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 555751 8268994 ~ 8269221 (+) True G39838
TU49733 lncRNA downstream 622655 8335898 ~ 8342053 (+) True AMCG00012797
AMCG00012768 mRNA upstream 253461 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012767 mRNA upstream 286094 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012763 mRNA upstream 327308 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012761 mRNA upstream 415963 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012762 mRNA upstream 429209 7247162 ~ 7279658 (+) True AMCG00012762
AMCG00012775 mRNA downstream 108729 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012777 mRNA downstream 149016 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012778 mRNA downstream 223137 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012786 mRNA downstream 320851 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012785 mRNA downstream 328559 8041802 ~ 8077147 (+) True AMCG00012785
TU49223 other upstream 1190946 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 1885547 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2156100 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 3335293 4370313 ~ 4373574 (+) True G38954
TU47822 other upstream 6884159 822151 ~ 824708 (+) False AMCG00012639
TU49477 other downstream 12245 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 122103 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 1399217 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2723664 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2723664 10436907 ~ 10444447 (+) False G40224

Expression Profile