RNA id: TU49477


Basic Information

Item Value
RNA id TU49477
length 2318
RNA type TUCP
GC content 0.44
exon number 2
gene id G39670
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7725488 ~ 7727828 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatgTTCTTGTTGTACTCTGTGTCTTTATTGAGGCAGTGCTTTTTGtacatgaatgaaaataatatgaaaaataagtgtttattggttgttttgtttttgttttgcaacgAAAAAGCTTTCACTAAGGCCAATGTTTACAATGTGTTATAAGAGGGTAACATTTATTGcagtttacagcatttttttttttgtcttattggACTAGTGATTCAAGTTTTTAGTGGTgcattaaatattcaaacatcTGTTTTTTGGCATGTTTATTTGATAGTACAACACAGTGTGTATCACAGATTTGATAGATACAGTTGTAGTTTAATTACAATGAATATCAGATATCAGAATCTCTTCcaaagaattaaattaaaataattttcacaaaaataagGCACAGACTAGGTTTTTGCATATTTACCCTAAAATCAGATCCTTCTTGGTTATTTAAGGAAAGTGAGAAATAGGATATGAATTCTGCCAAAATGCAAACgatgaagaaaacatgtatgtatCTTGAGATTGTACTTGATCAACAATAAATATATCGAGGTTAAAAGAATCAAATTTGATTCTTGACCACCTACTTTATTGAGTTCTTTATTGCACTGCTGCTGATtgttatcattaaaaaataacaCATTGCAATTTGAAACAATCCCACAAACTGCATATACCCAgctgatcattttaaataaaatgccatgATCTCTTTACATACATACTAGTGCTGCAGTCATTGTTGTGAAGATGGACATGTGtaattactcaaaacacatttacaatattgttattttaataagcaaATATACTAAAGAAAACTTAGTAGTAAGAAAAATGTACCAGGTTCCTGGGGCTGGGGATTGTATTGACATATCCCCCCGATTGGACCAATAACATTCTTTTCTATTTTGGCCTCCCTGAACAGATTTACAGATATGCAGATAAGGAAGCCTTCTCACTAGCATAATAGCAGCCATACACATCCTCCTTTATCTTATctatttttacataaaacatttctgcaattgtaaaaaaaaagagaaaaaagctcTTTTCCCATAAATCTTTAAAAGCAGGACATGAGTGAAGGGTGCTTAAGTGAGTTTTAATGTAAGCGAGTGATAtcgaaaacacacacacacagacacacacacacagacaaaggtaagtaaaaacaaaaccagttttGAAATTAAGTAGGACTTCAAATGCACACAACTGAGGGCTTTTCTGCGAGAGCATCAGGCACCCTACTAGGAGGAAAAACACTTCTAACACCACACAGGAGTTCTGAGGTATCCTGAGGGTCCCAATGCAGCAGCAGTAGCAAAAGCAAGGTCCATGCTGCGTGTCATGTGTCTGACACGTTCTGGTTGCCCTCGGGTGTCAGGAACTGCACTTTGGGCACCATCAGCGAGGAGTTGTTCCGGCGGATGGAGTTGTTTCTCCTCATGGAGTTGTTGCGCCTCATGGAGTTCCTCTTGCGCAGGGAGTTCTGGTGGGAGAGCTCGCTCTTCTGCAGTGTCTGGATGAGGATGGAGGGCTTCTCGTCCAGCTCCCGGGCGCTGCAGCGCGGCGTCACCACCTTGGCGGTGTTCCCGAACTTGGAGTAGTCCACTGAGTACACCCCTTCCTCTTCGGTCACGATGGGCACAAAGCGGTGGCCCCACTGGATCTCCTCGGTCACGTAAGAGGTCCGGGCCTGGGTGGTGATGCCCGTGGTCTCCACCACcccttccaggatgacaatgatCTCCAGGTCGCTGCTCTGCAGGTCGCTGGCAGACAGGTCATAGAGGGGGCTGTTCTTATCGATGACGTGGCAGATGATGAGGGGGGCCAGCAGGAAGATGCTGTTGCTCTTAATGGGGCTCTCAGTCTGAATGTCGATCTGGTGGATGGGGATGACCTCCCCCTCAGGCGTGGTGGTCTTGCGCACCACCTGAAGCCTCACGGCCGCCCCGATGATCATGCTCTTGCGCAGGTCTCCCACCCGGAACATGAAGCATAGCCGGTTGTTGCGCACGGCGATGACAGCGTGCCGGCTGAAGATGAGTGTCTCTGCGCGCCGGTGGGACTGCGCCGTCTTCATAAAAATGCAGCCAAGCATGATGGCATTGATGATCAGCCCAGCGATGTTCTGCACGATCAGCACGGTGATGGCCGTGGGACACTGCTCTGTTATCATGCGCCCCCCGAAGCCAATGGTCACTTGCACCTCGATGGAGAATAGAAAGGCCGATGTGAATGACCTGTGTGAGAAACGGAAACGGAAGACGGTCAGGACAAGTTTGGAAACCACCCAGCTCACCAAGGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49474 lncRNA upstream 12245 7708867 ~ 7713243 (+) True G39668
TU49424 lncRNA upstream 363127 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 507029 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 827258 6897997 ~ 6898230 (+) True G39560
TU49284 lncRNA upstream 963210 6761965 ~ 6762278 (+) True G39538
TU49569 lncRNA downstream 178429 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 329191 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 541166 8268994 ~ 8269221 (+) True G39838
TU49733 lncRNA downstream 608070 8335898 ~ 8342053 (+) True AMCG00012797
TU49788 lncRNA downstream 808405 8536233 ~ 8569891 (+) False AMCG00012803
AMCG00012768 mRNA upstream 270082 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012767 mRNA upstream 302715 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012763 mRNA upstream 343929 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012761 mRNA upstream 432584 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012762 mRNA upstream 445830 7247162 ~ 7279658 (+) True AMCG00012762
AMCG00012775 mRNA downstream 94144 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012777 mRNA downstream 134431 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012778 mRNA downstream 208552 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012786 mRNA downstream 306266 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012785 mRNA downstream 313974 8041802 ~ 8077147 (+) True AMCG00012785
TU49223 other upstream 1207567 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 1902168 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2172721 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 3351914 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 6900780 820524 ~ 824708 (+) False AMCG00012639
TU49527 other downstream 107518 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 1384632 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2709079 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2709079 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 2709079 10436907 ~ 10444447 (+) False G40224

Expression Profile