RNA id: TU49633


Basic Information

Item Value
RNA id TU49633
length 1443
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G39776
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8057019 ~ 8132564 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatatatatatatatatatatatatatatatatacacatacatatacacacatacacacttgccaaaaaaatgcaatatttacttcacaacatcataataataatcaaaccaAGGTATGCATGCACACAATTCCCATTTATCCTGTTGTTTCTTCAATCTGTATGTACATCTCTGTGCAGATTTCCACagcaaagaaaactaaacaaaaataaagcaaaaaatgtaGCCACTGATGGTAAAGATGAATCACTGCATCACTGACAACAGATGCAGTCATTTACGCATCCTTATAGACTTCATCACAATATGTATCGCATGTATGGTAATCAGAACTTTTTGAGGGAAACCTGCAAAAGTACAGGAAAATAGCAATCATATTATAGAATAACTAAGATTGTAGGAGTTCTTTAataagatgtttgttttttaaatcttctgataaaaacaaaaaagaaaacaacataaaatgacATTTCCCAAATactctcaaaataaaaatatattctggtACAAATTAGACACTTAATATTACAATCATTGCACAAAGATCTGGAATTTTTATTCTGGATTCTTGTTTACATTCCACCAGAAGATTCTCTTTAAATAACGAAACGCTGGGCATATCTTCAACTTTGAAGTAGGATTTTGTGGTCATGAATTcacaggaaagaaaaagtgATGCAAATGTGTGAAGCATTACATTCATGattttcacagacacacacatacataaaaccaGAAAGAAGAGTCACATTCTGACAAAATCATTTCAAAGAATACTATAATGACTTACAAGGAAACAAATATAGTGCCCCAGCTGTATTGTGGTACAGTAGTTGTAGTGGATAATTTTACGAAAATTTGGTCTATTGACAGTTTCATTAAACTCGAAAAGGACTGATCCTCATTGATGTTCTCactaaaaagataaaaaataataataataataataatctcttcATAAAAATTTAATTACCAGGTGCAGAAAAGCcataattttgtcattttgtttcaaGGTATTGATATACTGTAATCAGAGAAATCTAACTGCAGATTTACTTTAAAGCTTATCCATACTTGACCGTGACAAACTGCCAGCATGTTTCTTCTCCAGTCCAGACACCCAGAGATGTCTGTTCCCCGCCCATCCAGAACGCGCACAAGAACCAAACACTTAATAACTCTGGCCCAGGAGCCTTTCTTCctcaagcagcagcagcagcttggTCTTCCTGGGGCTTGGCTGCTCTCTTTGTGGTCTCTGTTCCTGGGACTGTTTCTTCAGGAAACGCTGTGTCCCTGTTACCCCTGCAGCTTCTTTTCCAAGCGGTCTAGTTTGGCCAGGTTCTCCTTCAGGAGCTTGCTGCCCGGGGAAAGCTGCAAGGCCTTTTCGTAGTACTTGCGCGCTGCCACGTAGTCTCCCTGCACAGACATGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49569 lncRNA upstream 147853 7906257 ~ 7909166 (+) True G39737
TU49475 lncRNA upstream 321751 7714497 ~ 7735268 (+) True G39669
TU49474 lncRNA upstream 343776 7708867 ~ 7713243 (+) True G39668
TU49424 lncRNA upstream 694658 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 838560 7213745 ~ 7218459 (+) True G39586
TU49699 lncRNA downstream 136430 8268994 ~ 8269221 (+) True G39838
TU49733 lncRNA downstream 203334 8335898 ~ 8342053 (+) True AMCG00012797
TU49788 lncRNA downstream 403669 8536233 ~ 8569891 (+) False AMCG00012803
TU49822 lncRNA downstream 534190 8666754 ~ 8667464 (+) True G39951
TU49901 lncRNA downstream 918523 9051087 ~ 9053819 (+) True G40022
AMCG00012786 mRNA upstream 22620 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012778 mRNA upstream 98044 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012777 mRNA upstream 192189 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012775 mRNA upstream 224231 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012768 mRNA upstream 601613 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012797 mRNA downstream 205591 8338155 ~ 8345855 (+) False AMCG00012797
AMCG00012798 mRNA downstream 309840 8442404 ~ 8443642 (+) True AMCG00012798
AMCG00012803 mRNA downstream 422526 8555090 ~ 8569891 (+) True AMCG00012803
AMCG00012807 mRNA downstream 438894 8571458 ~ 8607377 (+) True AMCG00012807
AMCG00012811 mRNA downstream 662604 8795168 ~ 8799438 (+) True AMCG00012811
TU49527 other upstream 220805 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 329191 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 1539098 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2233699 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2504252 5552417 ~ 5552767 (+) True G39297
TU49939 other downstream 979896 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2304343 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2304343 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 2304343 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 4356011 12488575 ~ 12535929 (+) True G40629

Expression Profile