RNA id: TU49798


Basic Information

Item Value
RNA id TU49798
length 1816
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G39929
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8568052 ~ 8569889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTGAAGACACATCTTTATTAATAAATCAGCAAAGCAAGCATGGAAAGTACAGTGCATAGGAATTTATACAACAaccaaacaatataaaaatataacataagCTGTGTGCCAGTAAAAGAGACTGTATAACTGAGAAAGTGCTATTATACTCTAGTCATGCCATTTGAAACGTCCCGTACATGATATCGATCCAAAGCTTTGTACATCCACACAATAAAGACATTCAAAAGTGTCTAACTGTGCAGTAATGGTGGCGGGTGGGGACTTACAAGCTGTTTGGTAGTCAATGCAGGAGCAATACAAATGAATAGCAGTAGGCTTTGATGTGGGAATGGCCCTGCTCTCCATTGTATTGATACATCCAAAGATGAGGTTCCTCTCTCAGTTTCTCATTTCCAAAGTTATAACTAAGGTCTGTTCAACATGTGGCTCATCCCATCTGTTCCTCTACAGGACTTTGTCACAACTGCCTCCCtggacatttactttttttcttttatgtggttcaattacattttaagggagatgtttcattattatttaaagtccTACAGAGGAAAGATGACAAGATGTGTAAAACATTGAGTGTCAGTGGGTTTGCCTTAACGATTCTGCGTTAAGGCTGAGATATAGttaaaactggaaaacacaACGGGCAAAGGATTGTGATATGTTCCCTTTAATAGCTGcatttcatgaataaaataaacaaaaacacagaacgAACAAAAAATCGAAGAAATCAGCTGCtctgcatatatatatatgacagcAATGTGGTCAATATAAAACTGACCACAAACActttaaagagaaacaaacacccTCATTCACTTCTAACATGCAAAGCCCATTTGCTTTTCCAaatgaaatcatgtttttttttttttttggctttccTAAGTCAACCTTCCCACTCAAACAGTTCCAAAAAGGTAGTGAGAAACAGGTCTCAGTGATGGGGATATTTTCAGCATTACACTTTTTCACTACAACAGATGAACCCTGAGATTCTTCCAGCACATTCTTTGACTAAGCTGACTGTTTATTATGGTTTGGTTCtgttaaatatagtttttttttaatacatgtggAGACCACTACACGACTAGAAATTGTACCTCCAGAGAATTTGTATTCATGGTAGTGCCATTAGTTTATACAAAGCTTTCTGTTTCTGCCATTATACCATCACGTGATTAGAAttgaatagaatagaatagaacaGAAAGAATGAATGATTGATTATACATTAAGATCAGACAGCAACTGGAGATCCACAAGTCTCTATCGGAAAATCTAGGTGCTGTTGAATTACATGGAATAGCCAGTTGATCCAGCGAGTTGATAGAAGACATTGGGAAGCGACAGCAAAAGTCTGTGGTTTCCAGTGTGGCATGCAGCAGGACGTCTTTACAAGCTAAAATCAAAGCTGAGGTCTGACTTGCCCATCTTCTGTTTGTAAACTGCATCAAACTTCTCATTCATCGATACAGTAAAGATGTCCTTCCACAAGCCAACTCTCcctgaaataaacacatatttgaGAAATAACACCTAAAGATGGAGATCAATGATTTATCTGtcctttttaatctgttttttagACAATATTCCACATTCATAGCAGGTGGAGTTTCTCATTCTGATTCTACCCAGGAGATTTGTAACATTGATGTCGCCCAACCAGTAAGTGACGCAGCCTCCATTAGACTCAAAGATGATTCCCCACAAGAGATTTCTCAGACACTTTGCAGTTCTGAtgactggaaaaaatacatatattatccccataatattttattgttgcttaA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49700 lncRNA downstream 298831 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 672326 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 739905 7827278 ~ 7828147 (-) True G39707
TU49465 lncRNA downstream 896410 7671236 ~ 7671642 (-) True G39662
TU49351 lncRNA downstream 1417229 7150617 ~ 7150823 (-) True G39580
TU49823 lncRNA upstream 90559 8660448 ~ 8667024 (-) True G39952
TU49886 lncRNA upstream 330224 8900113 ~ 8901481 (-) True G40008
TU49922 lncRNA upstream 513771 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 667011 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 1116921 9686810 ~ 9690911 (-) True G40172
AMCG00012805 mRNA downstream 14963 8536168 ~ 8553089 (-) True AMCG00012805
AMCG00012806 mRNA downstream 35334 8499637 ~ 8532718 (-) True AMCG00012806
AMCG00012804 mRNA downstream 88873 8464160 ~ 8479179 (-) True AMCG00012804
AMCG00012800 mRNA downstream 115899 8443996 ~ 8452153 (-) True AMCG00012800
AMCG00012802 mRNA downstream 129074 8413044 ~ 8438978 (-) True AMCG00012802
AMCG00012809 mRNA upstream 42353 8612242 ~ 8616101 (-) True AMCG00012809
AMCG00012808 mRNA upstream 68048 8637937 ~ 8650040 (-) True AMCG00012808
AMCG00012813 mRNA upstream 97428 8667317 ~ 8681599 (-) True AMCG00012813
AMCG00012814 mRNA upstream 168281 8738170 ~ 8747560 (-) True AMCG00012814
AMCG00012812 mRNA upstream 232993 8802882 ~ 8821156 (-) True AMCG00012812
TU49217 other downstream 2111874 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6383889 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 6790831 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8028461 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 542552 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3670507 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4545004 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 9310336 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9384174 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile