RNA id: TU49886


Basic Information

Item Value
RNA id TU49886
length 1369
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G40008
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8900113 ~ 8901481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgtttttgtttgtttgtttgtttgttcattctgTTTAGAGcttgagatttattttacaaacagccattttaggatttttgttttatttgtgtgttgatCAGTATCCTCTATATGTATAATTAACGGCTTTGTTAGCACTTGGGTATTACTATAGTATCAACAACCTAACACTCAGTAAAGACTGGTTTGTATTTTCCTGGTAGTTAATTACTGACCTGTTGCTTATCGTGTTGCACGACACGTGTCGCGCATgattctttgttgttgtttttgcctgAGTTATTTTACATGCCAATTACGTGATCcaggaacaaaaacacagttaCCTATTAAGGTGACTGAGGTGAAGTGTGACTGCCCCGTCAATGGAATGTTCAGCTCTAAGCTCTAATATAACTCTCCCCAAATAAGCATCTTCACAAAATCTTCAGAGATTGCTTTTGCCAGTATAGTTAAGAAATAGAGGAAATACTGAAGAACAGTAACAAAGACTCACTCAGATCATACAACCAAGACAACACTAAATATCTGGAAATAAATATCTGGTATAAACTAATCTACTTGCGGAGTGCAACTTACTGAAGTAAACCGTTGGTACACTAAAAAATCCTAACTGCTGAAGTGAATCATACCAGCGTATAACAGTAACTAAGGCAAACCAGCAATTCCAGATATACTGTgttctgtattaaaataatacatcaaaagaTCTTGTTGTCCGTACcatgaaattcaaattaaactacCAATTATTCCACTACTGTGGCAGTATCTCAGCACTGCACACgtcatattaaatacaaatacataattaacatCAATGTGACCAATCTTCTGTGATTGATGGTATTCattcatatgaaataaatacCAGGGATATTACTATGCTGTCAAAGTTTCTTGATACGTAAATTGAGCTTTTATGGCAAATTGTCCTCTataaattcatttaattttcttttctttgtgtaaaTACTGTTGGTGCTCTACAAAATACCCAAGTGCACCGTTCAAAGGAAGAATACAAATTCAGTGTAGCCGTTGATTTcaaatgaatttaatttttttgagccCCACACAGTCTACTGTAAAATGATTCCATGTGTAAAGAAACATTCCGATTCTTactcatgttttaatttatttatttattcagaggTTTCTTTTTGATAAGAGATTTTATCAGTGTGTTTTCTGGCCAGGCTACGTATTCTGAATTCATTCTATAAATTGACTCCACAATCTCTTCAAGAAAGCCGACACACTGATCAGTTATATTAGAAAAGGTTGGTAAGACAAACTCTGTGGAAGTGTGCAGGCAAATTCATCTTCAGGTGTTTTCTCAAATAAAACTGCTCAGAAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49823 lncRNA downstream 233089 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 330224 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 630892 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 1004387 7891577 ~ 7895726 (-) False AMCG00012782
TU49523 lncRNA downstream 1071966 7827278 ~ 7828147 (-) True G39707
TU49922 lncRNA upstream 182179 9083660 ~ 9085793 (-) True G40039
TU50011 lncRNA upstream 335419 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 785329 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1324213 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1648176 10549657 ~ 10551377 (-) True G40266
AMCG00012821 mRNA downstream 50621 8846584 ~ 8849492 (-) True AMCG00012821
AMCG00012812 mRNA downstream 78957 8802882 ~ 8821156 (-) True AMCG00012812
AMCG00012814 mRNA downstream 152553 8738170 ~ 8747560 (-) True AMCG00012814
AMCG00012813 mRNA downstream 218514 8667317 ~ 8681599 (-) True AMCG00012813
AMCG00012808 mRNA downstream 250073 8637937 ~ 8650040 (-) True AMCG00012808
AMCG00012823 mRNA upstream 5361 8906842 ~ 8907663 (-) True AMCG00012823
AMCG00012827 mRNA upstream 13582 8915063 ~ 8967612 (-) True AMCG00012827
AMCG00012825 mRNA upstream 111880 9013361 ~ 9031350 (-) True AMCG00012825
AMCG00012822 mRNA upstream 150096 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012824 mRNA upstream 176407 9077888 ~ 9083331 (-) True AMCG00012824
TU49217 other downstream 2443935 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6715950 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7122892 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8360522 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 210960 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3338915 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4213412 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8978744 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 9052582 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile